| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2352340 | 45 (0.700) | 3 (0.050) | 3/240 | NT | 6.4% | coding (925/1515 nt) | PP_2067 | EmrB/QacA family drug resistance transporter |
| ? | NC_002947 | = 2352356 | 45 (0.740) | coding (909/1515 nt) | PP_2067 | EmrB/QacA family drug resistance transporter | |||||
GCACTGTCGGCGCTCAGGCCAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2352189‑2352340‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgcGCACGACGTGGGCGTG‑GCGCTGATCGCCTATGGCGTGGTGCAGTTGCTGCTGGCGCCGTTGATGCCCCGGCTGATGGGCTGGACCAGTGCCAAGTTCATGGTCGCCAGCGGCTTTTTGATCATGGCGCTGGGCTGCTGGCTGG < NC_002947/2352356‑2352214 GCACTGTCGGCGCTCAGGCCAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAG > 3:191426/1‑149GCACTGTCGGCGCTCAGGCCAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAG > 3:197518/1‑149 TCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGCGCACGACGTGGGCGTG‑GCGCTGATC > 3:365936/1‑92 TCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGCGCACGACGTGGGCGTG‑GCGCTGATC < 4:365936/92‑1 AACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCCACGTCGTGCGCGCTGATCGCCTATGGCGTGGTGCAGTTGCTGCTGGCGCCGTTGATGCCCCGGCTGATGGGCTGGACCAGTGCCAAGTTCATGGTCGCCAGCGGCTTTTTGAT > 7:275086/1‑149 GGCGAGCAGCGC‑CACGCCCTCGGCGTGCGCGCTGATCGCCTATGGCGTGGTGCAGTTGCTGCTGGCGCCGTTGATGCCCCGGCTGATGGGCTGGACCAGTGCCAAGTTCATGGTCGCCAGCGGCTTTTTGATCATGGCGCTGGGCTcaa < 8:275086/149‑4 AGCGCGCACGACGTGGGCGTG‑GCGCTGATCGCCTATTGCGTGGTGCAGTTGCTGCTGGCGCCGTTGATGCCCCGGCTGATGGGCTGGACCAGTGCCAAGTTCATGGTCGCCAGCGGCTTTTTGATCATGGCGCTGGGCTGCTGGCTGG < 1:371448/148‑1 GCACTGTCGGCGCTCAGGCCAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2352189‑2352340‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgcGCACGACGTGGGCGTG‑GCGCTGATCGCCTATGGCGTGGTGCAGTTGCTGCTGGCGCCGTTGATGCCCCGGCTGATGGGCTGGACCAGTGCCAAGTTCATGGTCGCCAGCGGCTTTTTGATCATGGCGCTGGGCTGCTGGCTGG < NC_002947/2352356‑2352214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |