New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2352340	45 (0.700)	3 (0.050)	3/240	NT	6.4%	coding (925/1515 nt)	PP_2067	EmrB/QacA family drug resistance transporter
	?	NC_002947	= 2352356	45 (0.740)					coding (909/1515 nt)	PP_2067	EmrB/QacA family drug resistance transporter

CAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTAGTGCCCCAGCAAGCGCAGATTGATG  >  NC_002947/2352208‑2352488                                                                                                                                                       |                                                                                                                                     cAGCCACCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTgc                                                                                                                                      >  6:260699/1‑149 (MQ=255)       ccagccagCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCAATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCgcgct                                                                                                                                 <  1:371448‑M2/148‑6 (MQ=255)         agccagcAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGaa                                                                                                                              >  7:370037/1‑149 (MQ=255)             ttgagcccaGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGCGCACGCCG‑AGGGCGTGcgctgctcgcc                                                                                                                            <  8:275086‑M2/146‑12 (MQ=255)                      gcgcCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTTCGCGCTGAACCCCTGCAACTGc                                                                                                                 <  4:191426/149‑1 (MQ=255)                      gcgcCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGc                                                                                                                 <  4:197518/149‑1 (MQ=255)                      gcgcCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGc                                                                                                                 <  5:258724/149‑1 (MQ=255)                         ccATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCgag                                                                                                              <  5:260699/149‑1 (MQ=255)                          cATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCgaga                                                                                                             <  4:124464/149‑1 (MQ=255)                          cATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCga                                                                                                               >  4:205575/1‑147 (MQ=255)                           aTGATCAACAAGCCGCTGGCGACCATGACCTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGagag                                                                                                            <  4:223745/149‑1 (MQ=255)                              aTCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGCGCACGACG‑TGGGCGTGcgctgatcgcctatggcgtggtgcagtt                                                                                                           >  7:275086‑M2/1‑121 (MQ=255)                               tCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCTATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAg                                                                                                        <  2:371448/149‑1 (MQ=255)                                   aaaGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTgg                                                                                                    >  4:88081/1‑149 (MQ=255)                                                 ccATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACAcc                                                                                      <  3:320640/149‑1 (MQ=255)                                                  cATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACt                                                                                                                   <  7:392904/119‑1 (MQ=255)                                                  cATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACt                                                                                                                   >  8:392904/1‑119 (MQ=255)                                                           ggCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGACGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAAc                                                                             <  6:272685/148‑1 (MQ=255)                                                              aCTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAAc                                                                                                                             <  8:340424/97‑1 (MQ=255)                                                              aCTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAAc                                                                                                                             >  7:340424/1‑97 (MQ=255)                                                              aCTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTgg                                                                         >  8:309252/1‑149 (MQ=255)                                                                  gTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTggg                                                                                                   <  8:87241/119‑1 (MQ=255)                                                                         ccATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCa                                                                 >  5:243635/1‑146 (MQ=255)                                                                          cATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACTCCATAGTCGATCAGCGC‑CACGCCA‑ACGTCGTTCGAGCTGAACCCCTGCAACTTCGAGAGGTAGTTGGGCACCAGGCACCCCCGGCCGCACGTGGCCGCGCCa                                                                 >  4:22748/1‑145 (MQ=255)                                                                          cATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGtt                                                                                                      >  7:142568/1‑108 (MQ=255)                                                                          cATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGtt                                                                                                      <  8:142568/108‑1 (MQ=255)                                                                           aTCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGAt                                                            >  2:236644/1‑149 (MQ=255)                                                                            tCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGAt                                                            >  3:306832/1‑148 (MQ=255)                                                                            tCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATg                                                           <  3:88081/149‑1 (MQ=255)                                                                              aGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGaa                                                         <  4:306832/149‑1 (MQ=255)                                                                                  ggggCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATc                                                     <  7:309252/149‑1 (MQ=255)                                                                                           aCGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTg                                            >  5:186286/1‑149 (MQ=255)                                                                                           aCGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTg                                            >  6:241164/1‑149 (MQ=255)                                                                                           aCGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTg                                            <  6:243635/149‑1 (MQ=255)                                                                                             ggCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGc                                          <  3:205575/149‑1 (MQ=255)                                                                                             ggCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGAGAGAGGTAGTTGGGCACCAGGAACACAAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTgg                                           >  6:332607/1‑148 (MQ=255)                                                                                               cgcCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCaa                                        <  8:370037/149‑1 (MQ=255)                                                                                                  cagcagCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGc                                     <  3:21549/149‑1 (MQ=255)                                                                                                            tGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTa                           <  5:241164/149‑1 (MQ=255)                                                                                                             gCACCACGCCATAGGCGATCAGCGC‑CACGCCCGACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGtt                                                                                                      >  1:256975/1‑74 (MQ=255)                                                                                                             gCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGtt                                                                                                      <  2:256975/73‑1 (MQ=255)                                                                                                                    gCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAAc                                                                             <  5:125075/91‑1 (MQ=255)                                                                                                                    gCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAAc                                                                             >  6:125075/1‑91 (MQ=255)                                                                                                                          ggCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCAc                                                                                                >  1:202025/1‑66 (MQ=255)                                                                                                                          ggCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCAc                                                                                                <  2:202025/66‑1 (MQ=255)                                                                                                                             gATCAGCGC‑CACGCCC‑ACGTCGTGCgcgctgatcgcctatggcgtggtgcagttgctgctggcgccgttgatgccccggctgatgggctgga                                                                   <  4:365936‑M2/92‑68 (MQ=255)                                                                                                                             gATCAGCGC‑CACGCCC‑ACGTCGTGCgcgctgatcgcctatggcgtggtgcagttgctgctggcgccgttgatgccccggctgatgggctgga                                                                   >  3:365936‑M2/1‑25 (MQ=255)                                                                                                                               tCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTAGTGCCCCAGCAAgcg            >  8:135625/1‑145 (MQ=255)                                                                                                                                  gcgc‑CACGCCC‑AAGTAGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAAAGTGGAAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTAGTGCCCCAGCAAGCGCATATtg     <  3:22748/149‑1 (MQ=255)                                                                                                                                    gc‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTAGTGCCCCAGCAAGCGCAGATtgat   <  1:236644/149‑1 (MQ=255)                                                                                                                                     c‑cACGCAA‑ACGTCGTCCGCGCTGAACCCCTGCAACTACCAGAATTAGTTCGGAACCAGCAACACCAGGCCCAACCTGGCAGCCCCAAAGATGAAAATAGCCACGCTCCAAACGACGAAGTTGAAGTCACCAAACAAGCGCAGAttt     >  4:199974/1‑145 (MQ=255)                                                                                                                                       cACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTAGTGCCCCATCAAGCGAAGAatgatg  >  7:66880/1‑148 (MQ=255)                                                                                                                                          gCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCa                                                                       >  4:222139/1‑76 (MQ=255)                                                                                                                                          gCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCa                                                                       <  3:222139/76‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                     CAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTAGTGCCCCAGCAAGCGCAGATTGATG  >  NC_002947/2352208‑2352488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.