New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2352340	45 (0.700)	3 (0.050)	3/240	NT	6.4%	coding (925/1515 nt)	PP_2067	EmrB/QacA family drug resistance transporter
	?	NC_002947	= 2352356	45 (0.740)					coding (909/1515 nt)	PP_2067	EmrB/QacA family drug resistance transporter

TCGGCGCTCAGGCCAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTAGTGCCCCAGCAAGCGCAGATTGAT  >  NC_002947/2352195‑2352487                                                                                                                                                  |                                                                                                                                                      tCGGCGCTCAGGCCAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGc‑c                                                                                                                                                     <  2:24494/147‑1 (MQ=255) tCGGCGCTCAGGCCAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGc‑c                                                                                                                                                     <  7:95864/147‑1 (MQ=255) tCGGCGCTCAGGCCAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CAc                                                                                                                                                   >  4:320640/1‑149 (MQ=255)     cgcTCAGGCCAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGccc                                                                                                                                               <  1:97678/149‑1 (MQ=255)     cgcTCAGGCCAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGccc                                                                                                                                               <  8:301708/149‑1 (MQ=255)              cAGCCACCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTgc                                                                                                                                     >  6:260699/1‑149 (MQ=255)                    ccagccagCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCAATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCgcgct                                                                                                                                <  1:371448‑M2/148‑6 (MQ=255)                      agccagcAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGaa                                                                                                                             >  7:370037/1‑149 (MQ=255)                          ttgagcccaGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGCGCACGCCG‑AGGGCGTGcgctgctcgcc                                                                                                                           <  8:275086‑M2/146‑12 (MQ=255)                                   gcgcCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTTCGCGCTGAACCCCTGCAACTGc                                                                                                                <  4:191426/149‑1 (MQ=255)                                   gcgcCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGc                                                                                                                <  5:258724/149‑1 (MQ=255)                                   gcgcCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGc                                                                                                                <  4:197518/149‑1 (MQ=255)                                      ccATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCgag                                                                                                             <  5:260699/149‑1 (MQ=255)                                       cATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCgaga                                                                                                            <  4:124464/149‑1 (MQ=255)                                       cATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCga                                                                                                              >  4:205575/1‑147 (MQ=255)                                        aTGATCAACAAGCCGCTGGCGACCATGACCTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGagag                                                                                                           <  4:223745/149‑1 (MQ=255)                                           aTCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGCGCACGACG‑TGGGCGTGcgctgatcgcctatggcgtggtgcagtt                                                                                                          >  7:275086‑M2/1‑121 (MQ=255)                                            tCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCTATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAg                                                                                                       <  2:371448/149‑1 (MQ=255)                                                aaaGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTgg                                                                                                   >  4:88081/1‑149 (MQ=255)                                                              ccATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACAcc                                                                                     <  3:320640/149‑1 (MQ=255)                                                               cATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACt                                                                                                                  >  8:392904/1‑119 (MQ=255)                                                               cATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACt                                                                                                                  <  7:392904/119‑1 (MQ=255)                                                                        ggCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGACGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAAc                                                                            <  6:272685/148‑1 (MQ=255)                                                                           aCTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAAc                                                                                                                            >  7:340424/1‑97 (MQ=255)                                                                           aCTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAAc                                                                                                                            <  8:340424/97‑1 (MQ=255)                                                                           aCTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTgg                                                                        >  8:309252/1‑149 (MQ=255)                                                                               gTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTggg                                                                                                  <  8:87241/119‑1 (MQ=255)                                                                                tCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGCgcacgacgtgggcgtggcgctgatc                                                                                                                              <  4:365936‑M1/92‑26 (MQ=255)                                                                                tCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGCgcacgacgtgggcgtggcgctgatc                                                                                                                              >  3:365936‑M1/1‑67 (MQ=255)                                                                                      ccATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCa                                                                >  5:243635/1‑146 (MQ=255)                                                                                       cATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACTCCATAGTCGATCAGCGC‑CACGCCA‑ACGTCGTTCGAGCTGAACCCCTGCAACTTCGAGAGGTAGTTGGGCACCAGGCACCCCCGGCCGCACGTGGCCGCGCCa                                                                >  4:22748/1‑145 (MQ=255)                                                                                       cATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGtt                                                                                                     >  7:142568/1‑108 (MQ=255)                                                                                       cATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGtt                                                                                                     <  8:142568/108‑1 (MQ=255)                                                                                        aTCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGAt                                                           >  2:236644/1‑149 (MQ=255)                                                                                         tCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGAt                                                           >  3:306832/1‑148 (MQ=255)                                                                                         tCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATg                                                          <  3:88081/149‑1 (MQ=255)                                                                                           aGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGaa                                                        <  4:306832/149‑1 (MQ=255)                                                                                               ggggCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATc                                                    <  7:309252/149‑1 (MQ=255)                                                                                                        aCGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTg                                           >  6:241164/1‑149 (MQ=255)                                                                                                        aCGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTg                                           <  6:243635/149‑1 (MQ=255)                                                                                                        aCGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTg                                           >  5:186286/1‑149 (MQ=255)                                                                                                          ggCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGc                                         <  3:205575/149‑1 (MQ=255)                                                                                                          ggCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGAGAGAGGTAGTTGGGCACCAGGAACACAAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTgg                                          >  6:332607/1‑148 (MQ=255)                                                                                                            cgcCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCaa                                       <  8:370037/149‑1 (MQ=255)                                                                                                               cagcagCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGc                                    <  3:21549/149‑1 (MQ=255)                                                                                                                      aaCTGCACCACGCCATAGGCGATCAGCGCcacgcccacgtcgtgcgcgctgatcgcctatggcgtggtgcagttgctgctggcgccgttgatgccccggctgatgggctggaccagtgccaagttcatggtcgccagcggctttttgat                               >  7:275086‑M1/1‑29 (MQ=255)                                                                                                                         tGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTa                          <  5:241164/149‑1 (MQ=255)                                                                                                                          gCACCACGCCATAGGCGATCAGCGC‑CACGCCCGACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGtt                                                                                                     >  1:256975/1‑74 (MQ=255)                                                                                                                          gCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGtt                                                                                                     <  2:256975/73‑1 (MQ=255)                                                                                                                                 gCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAAc                                                                            >  6:125075/1‑91 (MQ=255)                                                                                                                                 gCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAAc                                                                            <  5:125075/91‑1 (MQ=255)                                                                                                                                       ggCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCAc                                                                                               <  2:202025/66‑1 (MQ=255)                                                                                                                                       ggCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCAc                                                                                               >  1:202025/1‑66 (MQ=255)                                                                                                                                       ggCGAGCAGCGCcacgccctcggcgtgcgcgctgatcgcctatggcgtggtgcagttgctgctggcgccgttgatgccccggctgatgggctggaccagtgccaagttcatggtcgccagcggctttttgatcatggcgctgggctcaa              <  8:275086‑M1/149‑138 (MQ=255)                                                                                                                                          gATCAGCGC‑CACGCCC‑ACGTCGTGCgcgctgatcgcctatggcgtggtgcagttgctgctggcgccgttgatgccccggctgatgggctgga                                                                  >  3:365936‑M2/1‑25 (MQ=255)                                                                                                                                          gATCAGCGC‑CACGCCC‑ACGTCGTGCgcgctgatcgcctatggcgtggtgcagttgctgctggcgccgttgatgccccggctgatgggctgga                                                                  <  4:365936‑M2/92‑68 (MQ=255)                                                                                                                                            tCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTAGTGCCCCAGCAAgcg           >  8:135625/1‑145 (MQ=255)                                                                                                                                              aGCGCgcacgacgtgggcgtggcgctgatcgcctattgcgtggtgcagttgctgctggcgccgttgatgccccggctgatgggctggaccagtgccaagttcatggtcgccagcggctttttgatcatggcgctgggctgctggctgg        <  1:371448‑M1/148‑144 (MQ=255)                                                                                                                                               gcgc‑CACGCCC‑AAGTAGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAAAGTGGAAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTAGTGCCCCAGCAAGCGCATATtg    <  3:22748/149‑1 (MQ=255)                                                                                                                                                 gc‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTAGTGCCCCAGCAAGCGCAGATtgat  <  1:236644/149‑1 (MQ=255)                                                                                                                                                  c‑cACGCAA‑ACGTCGTCCGCGCTGAACCCCTGCAACTACCAGAATTAGTTCGGAACCAGCAACACCAGGCCCAACCTGGCAGCCCCAAAGATGAAAATAGCCACGCTCCAAACGACGAAGTTGAAGTCACCAAACAAGCGCAGAttt    >  4:199974/1‑145 (MQ=255)                                                                                                                                                  |                                                                                                                                                      TCGGCGCTCAGGCCAGCCCCCAGCCAGCAGCCCAGCGCCATGATCAAAAAGCCGCTGGCGACCATGAACTTGGCACTGGTCCAGCCCATCAGCCGGGGCATCAACGGCGCCAGCAGCAACTGCACCACGCCATAGGCGATCAGCGC‑CACGCCC‑ACGTCGTGCGCGCTGAACCCCTGCAACTGCGAGAGGTAGTTGGGCACCAGGAACACCAGGCCGAACGTGGCAGCGCCAAAGATGAACATCGCCACGCTGGCAACGCCGAAGTTGTAGTGCCCCAGCAAGCGCAGATTGAT  >  NC_002947/2352195‑2352487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.