New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2404594	50 (0.780)	3 (0.050)	3/244	NT	5.9%	intergenic (+12/‑62)	PP_2106/PP_2107	ammonium transporter/hypothetical protein
	?	NC_002947	= 2404646	48 (0.780)					intergenic (+64/‑10)	PP_2106/PP_2107	ammonium transporter/hypothetical protein

GGCGTGCTGGTGGCCTTGGCCGGTGGATTTGCCGTGTACGGAGCCATTCGTGCGCTGCATGGCCTGCGCTTGAGCCATGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTACCAGCCAGGATTGAGCCAGGTCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2404442‑2404594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtCCCGGGTTGGCATACACAGAAGCCTATTCTAGGCGCGCCACGCCCACCCTGCACCTGACCTG  <  NC_002947/2404646‑2404585                                                                                                                                                                                                                         GGCGTGCTGGTGGCCTTGGCCGGTGGATTTGCCGTGTACGGAGCCATTCGTGCGCTGCATGGCCTGCGCTTGAGCCATGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTACCAGCCAGGATTGAGCCAGGTC                                                                    <  8:386328/149‑1     TGCTGGTGGCCTTGGCCGGTGGATTTGCCGTGTACGGAGCCATTCGTGCGCTGCATGGCCTGCGCTTGAGCCATGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTACCAGCCAGGATTGAGCCAGGTCAGGT                                                                >  4:46196/1‑149                                                                   CGCTTTAGCCATGCGCAGGAGTTCCAGGGCGCGGCCCGGGCGCTGCACCGGATCGGTGCTACCAGCCAGGCTTGAGCCAGGTCAGGTCCCGGGTTGGCATACACAGACGCCTATTCTAGGCGCGCCACGCCCACCCTGCACCTGACCTG  <  6:349799/149‑1                                                                             ATGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTACCAGCCAGGATTGAGCCAGGTCAGGTCCCGGGTTGGCATACACAGAAGCCTATTCTAGGCGCGCCACGCCCACCCTGCACCTGACC    >  7:190912/1‑137                                                                             ATGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTACCAGCCAGGATTGAGCCAGGTCAGGTCCCGGGTTGGCATACACAGAAGCCTATTCTAGGCGCGCCACGCCCACCCTGCACCTGACC    <  8:190912/137‑1                                                                                                                                                                                                                         GGCGTGCTGGTGGCCTTGGCCGGTGGATTTGCCGTGTACGGAGCCATTCGTGCGCTGCATGGCCTGCGCTTGAGCCATGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTACCAGCCAGGATTGAGCCAGGTCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2404442‑2404594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtCCCGGGTTGGCATACACAGAAGCCTATTCTAGGCGCGCCACGCCCACCCTGCACCTGACCTG  <  NC_002947/2404646‑2404585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.