New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2404594	50 (0.780)	3 (0.050)	3/244	NT	5.9%	intergenic (+12/‑62)	PP_2106/PP_2107	ammonium transporter/hypothetical protein
	?	NC_002947	= 2404646	48 (0.780)					intergenic (+64/‑10)	PP_2106/PP_2107	ammonium transporter/hypothetical protein

CCTGCGCTTGAGCCATGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGC  >  NC_002947/2404504‑2404794                                                                                                                                                |                                                                                                                                                     ccTGCGCTTGAGCCATGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGc                                                                                                                                                <  2:175672/149‑1 (MQ=255)     cgcTTGAGCCATGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCcac                                                                                                                                             <  5:235549/148‑1 (MQ=255)          gAGCCATGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGc                                                                                                                                                >  1:236887/1‑140 (MQ=255)          gAGCCATGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGc                                                                                                                                                <  2:236887/140‑1 (MQ=255)               aTGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTg                                                                                                                                   >  3:18037/1‑148 (MQ=255)                  aGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTTAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAAt                                                                                                                                <  4:49813/148‑1 (MQ=255)                   gCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGt                                                                                                                              <  5:376367/149‑1 (MQ=255)                    cAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTc                                                                                                                             <  4:18037/149‑1 (MQ=255)                             cAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGc                                                                                                                                                <  7:102475/121‑1 (MQ=255)                             cAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGc                                                                                                                                                >  8:102475/1‑121 (MQ=255)                             cAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTc                                                                                                                     <  6:184631/148‑1 (MQ=255)                             cAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCg                                                                                                                    >  7:124198/1‑149 (MQ=255)                                         cTGTCGCTGCACCGGATCGGTGCTACGCAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCg                                                                                                                    >  1:4984/1‑138 (MQ=255)                                         cTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCg                                                                                                                    <  2:4984/137‑1 (MQ=255)                                              gCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCa                                                                                                    <  5:151772/148‑1 (MQ=255)                                                     cGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGc                                                                                             >  8:206960/1‑148 (MQ=255)                                                       gATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGaa                                                                                          <  4:351869/149‑1 (MQ=255)                                                                tAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTc                                                                                                                             >  2:99503/1‑105 (MQ=255)                                                                tAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTc                                                                                                                             <  1:99503/105‑1 (MQ=255)                                                                  c‑cagccagGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCC‑CGGCTGCCACCTCTGCGAAGTGGCCGAGACt                                                                              >  5:193553/1‑149 (MQ=255)                                                                  c‑cagccagGATTGAGCCAGGTCAGGTGCAAGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCt                                                                                                                                    >  6:160517/1‑96 (MQ=255)                                                                  c‑cagccagGATTGAGCCAGGTCAGGTGCAAGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCt                                                                                                                                    <  5:160517/96‑1 (MQ=255)                                                                        cagGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTgtgt                                                                          <  7:206960/149‑1 (MQ=255)                                                                           gATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCAc                                                                                                                >  8:201047/1‑108 (MQ=255)                                                                           gATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCAc                                                                                                                <  7:201047/108‑1 (MQ=255)                                                                                 gCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGa                                                                                  <  2:297219/132‑1 (MQ=255)                                                                                 gCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGa                                                                                  >  1:297219/1‑132 (MQ=255)                                                                                 gCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCctc                                                                 >  6:115555/1‑149 (MQ=255)                                                                                   caggtcaggtGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTc                                                                                                                     >  4:152771/1‑95 (MQ=255)                                                                                   caggtcaggtGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTc                                                                                                                     <  3:152771/95‑1 (MQ=255)                                                                                   caggtcaggtGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCGTCTGTGTATGCCAACCCGGGacctgacctggctcaagcctggctggtagcaccgatccggtgcagcgcccgggccgcgccctggaactcctgcgcatggctaaagcg                                                               <  6:349799‑M2/149‑88 (MQ=255)                                                                                     ggtcaggtGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGacctgacctggctcaatcctggctggtagcaccgatccggtgcagcgacaggtccgcgccctggaactcctgctcat                                                                         <  8:190912‑M2/137‑78 (MQ=255)                                                                                     ggtcaggtGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGacctgacctggctcaatcctggctggtagcaccgatccggtgcagcgacaggtccgcgccctggaactcctgctcat                                                                         >  7:190912‑M2/1‑60 (MQ=255)                                                                                        caggtGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGa                                                          >  3:349693/1‑149 (MQ=255)                                                                                             gCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATg                                                     >  5:384104/1‑149 (MQ=255)                                                                                              cAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATgg                                                    >  7:167591/1‑149 (MQ=255)                                                                                              cAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATg                                                     <  7:244531/148‑1 (MQ=255)                                                                                              cAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATg                                                     <  8:124198/148‑1 (MQ=255)                                                                                              cAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATg                                                     >  8:244531/1‑148 (MQ=255)                                                                                               aGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGc                                                   >  4:192385/1‑149 (MQ=255)                                                                                                              cgcCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTg                                    <  8:167591/149‑1 (MQ=255)                                                                                                                 cTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTc                                 >  8:298848/1‑149 (MQ=255)                                                                                                                     aaTAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACa                             >  8:56036/1‑149 (MQ=255)                                                                                                                         ggCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCg                          <  6:384104/148‑1 (MQ=255)                                                                                                                            ttCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGcc                        >  2:248326/1‑147 (MQ=255)                                                                                                                                gtgtATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCAc                                                                                                   <  4:50649/68‑1 (MQ=255)                                                                                                                                gtgtATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCAc                                                                                                   >  3:50649/1‑68 (MQ=255)                                                                                                                                 tgtATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCgaga                    <  7:14413/146‑1 (MQ=255)                                                                                                                                 tgtATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCC‑CGGCTGCCACCTCTGCGAAGTGGCCGAGACTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGagag                   <  6:193553/146‑1 (MQ=255)                                                                                                                                  gtATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAgagc                  >  4:225247/1‑147 (MQ=255)                                                                                                                                     tGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAgagcgagc              <  5:115555/148‑1 (MQ=255)                                                                                                                                      gCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCAc                                                                                                   >  7:175241/1‑62 (MQ=255)                                                                                                                                      gCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCAc                                                                                                   <  8:175241/62‑1 (MQ=255)                                                                                                                                       ccAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCtg                                                                             >  1:221917/1‑83 (MQ=255)                                                                                                                                       ccAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCtg                                                                             <  2:221917/83‑1 (MQ=255)                                                                                                                                       ccAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCtt           >  1:382743/1‑149 (MQ=255)                                                                                                                                        cAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCttt          >  4:250946/1‑149 (MQ=255)                                                                                                                                            ccGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGt                                  >  5:279043/1‑121 (MQ=255)                                                                                                                                            ccGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGt                                  <  6:279043/121‑1 (MQ=255)                                                                                                                                            ccGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCttt          >  8:189912/1‑145 (MQ=255)                                                                                                                                            ccGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCttt          <  7:189912/145‑1 (MQ=255)                                                                                                                                                gACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGc  <  1:248326/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     CCTGCGCTTGAGCCATGAGCAGGAGTTCCAGGGCGCGGACCTGTCGCTGCACCGGATCGGTGCTAC‑CAGCCAGGATTGAGCCAGGTCAGGTGCAGGGTGGGCGTGGCGCGCCTAGAATAGGCTTCTGTGTATGCCAACCCGGGACCTGCCACATGCTGCCTGAATGTCAACTGTTCGGCACCCTCGGCTGCCACCTCTGCGAAGTGGCCGAGGCTGTGTTGATGCCTCTGGTCGATCATGGCCTGCTGGTAGAGCTGGTCGACATCGCCGAGAGCGAGCCTTTGTTCGAGC  >  NC_002947/2404504‑2404794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.