New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2882966	42 (0.660)	3 (0.050)	3/240	NT	6.5%	coding (375/723 nt)	PP_2538	hypothetical protein
	?	NC_002947	= 2883012	46 (0.760)					coding (421/723 nt)	PP_2538	hypothetical protein

TGGCCCATGATCAGGTCGAGCGGCTCATCGAAATGGCGCAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2882818‑2882966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcagCATCGCGCACCTGCACCAGGCCCTTGGCTGGCAGGCGGATTTTCACCTGCCGGACCTGCGCATCACCACTGTTGTGCAGTTCGATCAGCAGGCCGGTACGGTGGTCCACCAGCCCGGCCTCGAAAGGCTTGGCGAACAGCTGGGCA  <  NC_002947/2883012‑2882867                                                                                                                                                                                                                                                                                                         TGGCCCATGATCAGGTCGAGCGGCTCATCGAAATGGCGCAGGCTCCTTACGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAG                                                                                                                                                    <  8:185611/149‑1                             CGAAATGGCGCAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCC                                                                                                                                                         >  5:90670/1‑116                             CGAAATGGCGCAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCC                                                                                                                                                         <  6:90670/116‑1                                                         CTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGCATCGCGCACCTGCACCAGGCCCTTGGCTGGCAGGCGGATTTTCACCTGCCGGACC                                                                                            <  7:149519/149‑1                                                                                          GACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGCATCGCGCACCTGCACCAGGCCCTTGGCTGGCAGGCGGATTTTCACCTGCCGGACCTG                                                                                          >  3:215589/1‑118                                                                                          GACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGCATCGCGCACCTGCACCAGGCCCTTGGCTGGCAGGCGGATTTTCACCTGCCGGACCTG                                                                                          <  4:215589/118‑1                                                                                                                                                  GCAGCATCGCGCACCTGCACCAGGCCCTTGGCTGGCAGGCGGATTTTCACCTGCCGGACCTGCGCATCACCACTGTTGTGCAGTTCGATCAGCAGGCCGGTACGGTGGTCCACCAGCCCGGCCTCGAAAGGCTTGGCGAACAGCTGGG    >  7:117687/1‑148                                                                                                                                                    AGCATCGCGCACCTGCACCAGGCCCTTGGCTGGCAGGCGGATTTTCACCTGCCGGACCTGCGCATCACCACTGTTGTGCAGTTCGATCAGCAGGCCGGTACGGTGGTCCACCAGCCCGGCCTCGAAAGGCTTGGCGAACAGCTGGGCA  >  4:67441/1‑148                                                                                                                                                                                                                                                                                                         TGGCCCATGATCAGGTCGAGCGGCTCATCGAAATGGCGCAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2882818‑2882966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcagCATCGCGCACCTGCACCAGGCCCTTGGCTGGCAGGCGGATTTTCACCTGCCGGACCTGCGCATCACCACTGTTGTGCAGTTCGATCAGCAGGCCGGTACGGTGGTCCACCAGCCCGGCCTCGAAAGGCTTGGCGAACAGCTGGGCA  <  NC_002947/2883012‑2882867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.