New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2882966	42 (0.660)	3 (0.050)	3/240	NT	6.5%	coding (375/723 nt)	PP_2538	hypothetical protein
	?	NC_002947	= 2883012	46 (0.760)					coding (421/723 nt)	PP_2538	hypothetical protein

TGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGGTGTATTTCGATGCCGACTACTCGCAGATCCGCCATGGCGGGGTCAGTATCAG  >  NC_002947/2882867‑2883151                                                                                                                                                  |                                                                                                                                               tGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGct                                                                                                                                              >  4:67441‑M2/1‑146 (MQ=255)   cccAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGctgc                                                                                                                                            >  7:117687‑M2/1‑144 (MQ=255)                   gCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACgctgc                                                                                                                           >  1:403922/1‑149 (MQ=255)                     cTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGctgctg                                                                                                                         <  5:315526/149‑1 (MQ=255)                     cTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGctgctg                                                                                                                         >  2:373229/1‑149 (MQ=255)                             gCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGc                                                                                                                 >  7:25043/1‑149 (MQ=255)                              ccGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGcc                                                                                                                <  1:373229/149‑1 (MQ=255)                                      gtggACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCa                                                                                                        <  4:166666/149‑1 (MQ=255)                                         gACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCa                                                                                                               >  1:382496/1‑139 (MQ=255)                                         gACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCa                                                                                                               <  2:382496/139‑1 (MQ=255)                                          accaccGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGtt                                                                                                    >  7:274855/1‑149 (MQ=255)                                              ccGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGata                                                                                                >  5:285763/1‑149 (MQ=255)                                                           ctgATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGa                                                                                   <  2:403922/149‑1 (MQ=255)                                                              aTCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGc‑‑c                                                                              <  6:363510/149‑1 (MQ=255)                                                                  aaCTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGa                                                                                   <  8:166972/142‑1 (MQ=255)                                                                  aaCTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGt                                                                          <  8:274855/149‑1 (MQ=255)                                                                  aaCTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAAACGCCATCGCCCAGGTTGATATCCCTGCCATCGa                                                                                   >  7:166972/1‑142 (MQ=255)                                                                       cacaACAGTGGTGATGCGCGGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGctgctg                                                                                                                         <  8:22457/99‑1 (MQ=255)                                                                       cacaACAGTGGTGATGCGCGGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGctgctg                                                                                                                         >  7:22457/1‑99 (MQ=255)                                                                         caacaGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCt                                                                   >  3:141842/1‑149 (MQ=255)                                                                          aacaGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGa                                                                                   <  6:24532/134‑1 (MQ=255)                                                                          aacaGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGa                                                                                   >  5:24532/1‑134 (MQ=255)                                                                            caGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCGAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGc‑‑c                                                                              <  1:184589/135‑1 (MQ=255)                                                                            caGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGc‑‑c                                                                              >  2:184589/1‑135 (MQ=255)                                                                               tggtgATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑gg                                                            >  5:12426/1‑149 (MQ=255)                                                                                  tgATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGc                                                                                 >  3:65053/1‑128 (MQ=255)                                                                                  tgATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGc                                                                                 <  4:65053/128‑1 (MQ=255)                                                                                    aTGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTgg                                                       <  5:147318/149‑1 (MQ=255)                                                                                    aTGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTgg                                                       >  4:116253/1‑149 (MQ=255)                                                                                       cgcAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGgtg                                                    >  4:220636/1‑149 (MQ=255)                                                                                       cgcAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTCATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGgtg                                                    >  4:215059/1‑149 (MQ=255)                                                                                        gcAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGgtg                                                    >  4:383667/1‑148 (MQ=255)                                                                                         cAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGctgccggacctgcgcatcaccactgttgtgcagttcgatcagcaggccggtacggtggtc                                                                                    <  4:215589‑M2/118‑61 (MQ=255)                                                                                         cAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGctgccggacctgcgcatcaccactgttgtgcagttcgatcagcaggccggtacggtggtc                                                                                    >  3:215589‑M2/1‑58 (MQ=255)                                                                                           ggTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGctgccggacctgcgcatcaccactgttgtgcagttcgatcagcaggccggtacggtggtccaccagcccggcctcgaaaggcttggcgaacag                                                   <  7:149519‑M2/149‑94 (MQ=255)                                                                                               cGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGGTGTATTTCGa                                            >  2:138084/1‑149 (MQ=255)                                                                                                    ggTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGGTGTATTTCGATGCCg                                       <  4:141842/149‑1 (MQ=255)                                                                                                     gTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAgg                                                                                                      <  8:27881/88‑1 (MQ=255)                                                                                                     gTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAgg                                                                                                      >  7:27881/1‑88 (MQ=255)                                                                                                       gAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGGTGTATTTCGAt                                           <  2:197597/142‑1 (MQ=255)                                                                                                       gAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGGTGTATTTCGAt                                           >  1:197597/1‑142 (MQ=255)                                                                                                          aaTCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGtgtg                                                        <  6:237827/126‑1 (MQ=255)                                                                                                          aaTCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGtgtg                                                        >  5:237827/1‑126 (MQ=255)                                                                                                            tCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGGTGTATTTCGATGCCGACTACTCg                               <  6:12426/149‑1 (MQ=255)                                                                                                             ccGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGtgtg                                                        >  6:28050/1‑123 (MQ=255)                                                                                                              cGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGGTGTATTTCGATGCCGACTACTCg                               >  3:158255/1‑147 (MQ=255)                                                                                                              cGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGGTGTATTTCGATGCCGACTACTCGCa                             <  8:25043/149‑1 (MQ=255)                                                                                                                                accgTGCAAGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGGTGTATTTCGAt                                           >  4:127023/4‑117 (MQ=255)                                                                                                                                accgTGCAAGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGGTGTATTTCGAt                                           <  3:127023/114‑1 (MQ=255)                                                                                                                                   gTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGGTGTATTTCGATGCCGACTACTCGCAGATCCGCCATGGCGGGGTCAg        <  1:138084/149‑1 (MQ=255)                                                                                                                                            cgcgATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGCATGGGGTGCCAACAGCAAGGGTGTGGGTGTATTTCTATCCCGAAAACTCCCAAAACCGAAAGCGCGGGGACAGTaaaac  >  1:127458/1‑145 (MQ=255)                                                                                                                                                  |                                                                                                                                               TGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGC‑‑CAGGTGGCACCTGCAA‑GGTGTGGGTGTATTTCGATGCCGACTACTCGCAGATCCGCCATGGCGGGGTCAGTATCAG  >  NC_002947/2882867‑2883151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.