New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2882966	42 (0.660)	3 (0.050)	3/240	NT	6.5%	coding (375/723 nt)	PP_2538	hypothetical protein
	?	NC_002947	= 2883012	46 (0.760)					coding (421/723 nt)	PP_2538	hypothetical protein

TGGCCCATGATCAGGTCGAGCGGCTCATCGAAATGGCGCAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGCCAGGTGGCACCTGCAAGGTGTGGGTGTATTTCGATGCCG  >  NC_002947/2882818‑2883114                                                                                                                                                     |                                                                                                                                                     tGGCCCATGATCAGGTCGAGCGGCTCATCGAAATGGCGCAGGCTCCTTACGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAG                                                                                                                                                      <  8:185611‑M1/149‑1 (MQ=255)       aTGATCAGGTCGAGCGGCTCATCGAAATGGCGCAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGaa                                                                                                                                                 >  6:147318/1‑148 (MQ=255)         gATCAGGTCGAGCGGCTCATCGAAATGGCGCAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAAt                                                                                                                                              >  7:160886/1‑149 (MQ=255)           tCAGGTCGAGCGGCTCATCGAAATGGCGCAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATcc                                                                                                                                            >  8:117687/1‑149 (MQ=255)                     cGGCTCATCGAAATGGCGCAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTgccagc                                                                                                                                  <  5:395832/149‑1 (MQ=255)                           aTCGAAATGGCGCAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAgg                                                                                                                             <  8:160886/148‑1 (MQ=255)                                    gcgcAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTg                                                                                                                     >  5:366474/1‑147 (MQ=255)                                       cAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGt                                                                                                                <  6:366474/149‑1 (MQ=255)                                            tCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTgcgc                                                                                                            >  3:166666/1‑148 (MQ=255)                                                  tGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGct                                                                                                      >  4:67441‑M2/1‑146 (MQ=255)                                                    cccAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGctgc                                                                                                    >  7:117687‑M2/1‑144 (MQ=255)                                                         cTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGcatcgcgcacctgcaccaggcccttggctggcaggcggattttcacctgccggacc                                                                                              <  7:149519‑M1/149‑57 (MQ=255)                                                                    gCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACgctgc                                                                                   >  1:403922/1‑149 (MQ=255)                                                                     ccTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTg                                                                                                                        >  4:299207/1‑111 (MQ=255)                                                                     ccTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTg                                                                                                                        <  3:299207/111‑1 (MQ=255)                                                                      cTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGctgctg                                                                                 >  2:373229/1‑149 (MQ=255)                                                                      cTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGctgctg                                                                                 <  5:315526/149‑1 (MQ=255)                                                                              gCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGc                                                                         >  7:25043/1‑149 (MQ=255)                                                                               ccGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGcc                                                                        <  1:373229/149‑1 (MQ=255)                                                                                       gtggACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCa                                                                <  4:166666/149‑1 (MQ=255)                                                                                          gACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGcatcgcgcacctgcaccaggcccttggctggcaggcggattttcacctgccggacctg                                                                                            <  4:215589‑M1/118‑59 (MQ=255)                                                                                          gACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGcatcgcgcacctgcaccaggcccttggctggcaggcggattttcacctgccggacctg                                                                                            >  3:215589‑M1/1‑60 (MQ=255)                                                                                          gACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCa                                                                       <  2:382496/139‑1 (MQ=255)                                                                                          gACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCa                                                                       >  1:382496/1‑139 (MQ=255)                                                                                           accaccGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGtt                                                            >  7:274855/1‑149 (MQ=255)                                                                                               ccGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATc                                                                                                                                             <  4:135879/64‑1 (MQ=255)                                                                                               ccGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATc                                                                                                                                             >  3:135879/1‑64 (MQ=255)                                                                                               ccGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGata                                                        >  5:285763/1‑149 (MQ=255)                                                                                                            ctgATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGa                                           <  2:403922/149‑1 (MQ=255)                                                                                                               aTCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGcc                                        <  6:363510/149‑1 (MQ=255)                                                                                                                   aaCTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGa                                           <  8:166972/142‑1 (MQ=255)                                                                                                                   aaCTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGCCAGGt                                    <  8:274855/149‑1 (MQ=255)                                                                                                                   aaCTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAAACGCCATCGCCCAGGTTGATATCCCTGCCATCGa                                           >  7:166972/1‑142 (MQ=255)                                                                                                                        cacaACAGTGGTGATGCGCGGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGctgctg                                                                                 <  8:22457/99‑1 (MQ=255)                                                                                                                        cacaACAGTGGTGATGCGCGGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGctgctg                                                                                 >  7:22457/1‑99 (MQ=255)                                                                                                                          caacaGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGCCAGGTGGCACCt                             >  3:141842/1‑149 (MQ=255)                                                                                                                           aacaGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGa                                           >  5:24532/1‑134 (MQ=255)                                                                                                                           aacaGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGa                                           <  6:24532/134‑1 (MQ=255)                                                                                                                             caGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCGAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGcc                                        <  1:184589/135‑1 (MQ=255)                                                                                                                             caGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGcc                                        >  2:184589/1‑135 (MQ=255)                                                                                                                                tggtgATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGCCAGGTGGCACCTGCAAgg                       >  5:12426/1‑149 (MQ=255)                                                                                                                                   tgATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGc                                         <  4:65053/128‑1 (MQ=255)                                                                                                                                   tgATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGc                                         >  3:65053/1‑128 (MQ=255)                                                                                                                                     aTGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGCCAGGTGGCACCTGCAAGGTGTgg                  <  5:147318/149‑1 (MQ=255)                                                                                                                                     aTGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGCCAGGTGGCACCTGCAAGGTGTgg                  >  4:116253/1‑149 (MQ=255)                                                                                                                                        cgcAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGCCAGGTGGCACCTGCAAGGTGTGGgtg               >  4:220636/1‑149 (MQ=255)                                                                                                                                        cgcAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTCATATCCCTGCCATCGAGCCAGGTGGCACCTGCAAGGTGTGGgtg               >  4:215059/1‑149 (MQ=255)                                                                                                                                         gcAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGCCAGGTGGCACCTGCAAGGTGTGGgtg               >  4:383667/1‑148 (MQ=255)                                                                                                                                          cAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGctgccggacctgcgcatcaccactgttgtgcagttcgatcagcaggccggtacggtggtc                                            <  4:215589‑M2/118‑61 (MQ=255)                                                                                                                                          cAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGctgccggacctgcgcatcaccactgttgtgcagttcgatcagcaggccggtacggtggtc                                            >  3:215589‑M2/1‑58 (MQ=255)                                                                                                                                            ggTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGctgccggacctgcgcatcaccactgttgtgcagttcgatcagcaggccggtacggtggtccaccagcccggcctcgaaaggcttggcgaacag           <  7:149519‑M2/149‑94 (MQ=255)                                                                                                                                                cGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGCCAGGTGGCACCTGCAAGGTGTGGGTGTATTTCGa       >  2:138084/1‑149 (MQ=255)                                                                                                                                                  gcagcatcgcgcacctgcaccaggcccttggctggcaggcggattttcacctgccggacctgcgcatcaccactgttgtgcagttcgatcagcaggccggtacggtggtccaccagcccggcctcgaaaggcttggcgaacagctggg      >  7:117687‑M1/1‑4 (MQ=255)                                                                                                                                                    agcatcgcgcacctgcaccaggcccttggctggcaggcggattttcacctgccggacctgcgcatcaccactgttgtgcagttcgatcagcaggccggtacggtggtccaccagcccggcctcgaaaggcttggcgaacagctgggca    >  4:67441‑M1/1‑2 (MQ=255)                                                                                                                                                     ggTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGCCAGGTGGCACCTGCAAGGTGTGGGTGTATTTCGATGCCg  <  4:141842/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TGGCCCATGATCAGGTCGAGCGGCTCATCGAAATGGCGCAGGCTCCTTATGCCCAGCTGTTCGCCAAGCCTTTCGAGGCCGGGCTGGTGGACCACCGTACCGGCCTGCTGATCGAACTGCACAACAGTGGTGATGCGCAGGTCCGGCAGGTGAAAATCCGCCTGCCAGCCAAGGGCCTGGTGCAGGTGCGCGATGCTGCCGGCAACGACACGCTGCTGGAAACCGCCATCGCCCAGGTTGATATCCCTGCCATCGAGCCAGGTGGCACCTGCAAGGTGTGGGTGTATTTCGATGCCG  >  NC_002947/2882818‑2883114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.