New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2968028	37 (0.580)	4 (0.060)	4/248	NT	9.7%	coding (386/1794 nt)	PP_2596	ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 2968071	38 (0.610)					coding (343/1794 nt)	PP_2596	ABC transporter permease/ATP‑binding protein

CACGACCACGGCAAGGCGCCAGTCCATGGCGAACAGGTAGGCCACGGAAATCAGCACGGCGCCCACGGTGCGGCCCAGTGTGGTGAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2967880‑2968028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCTGATGCAAGTGCCGCTCGGCTGGTTCAGCGAGCGGGCATCAAGCGAAGTGAAA  <  NC_002947/2968071‑2968018                                                                                                                                                                                                             CACGACCACGGCAAGGCGCCAGTCCATGGCGAACAGGTAGGCCACGGAAATCAGCACGGCGCCCACGGTGCGGCCCAGTGTGGTGAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGC                                                        >  4:112393/1‑149                                      TAGGCCACGGAACTCCGCCCGGCGCCAACGGTGCGGCCCAGTGTGGTGAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCCTGATGCAAGTGCCGCTCGGCTGGTTCAGCGAGCGGG                   <  4:239308/149‑1                                                       CACGGCGCCCACGGTGCGGCCCAGTGTGGTGAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCGTGGCCCGTTTCACTTCGCCTGATGCAAGTGCCGCTCGGCTGGTTCAGCGAGCGGGCATCAAGCGAAGTGAAA  <  6:177729/149‑1                                                                                                                  TGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCCTGATGCAAGTGCCGCTCGGCTGGTTCAGCGAGCGGGCATCAA             <  1:388831/79‑1                                                                                                                  TGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCCTGATGCAAGTGCCGCTCGGCTGGTTCAGCGAGCGGGCATCAA             >  2:388831/1‑79                                                                                                                                                                                                             CACGACCACGGCAAGGCGCCAGTCCATGGCGAACAGGTAGGCCACGGAAATCAGCACGGCGCCCACGGTGCGGCCCAGTGTGGTGAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2967880‑2968028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCTGATGCAAGTGCCGCTCGGCTGGTTCAGCGAGCGGGCATCAAGCGAAGTGAAA  <  NC_002947/2968071‑2968018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.