New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2968028	37 (0.580)	4 (0.060)	4/248	NT	9.7%	coding (386/1794 nt)	PP_2596	ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 2968071	38 (0.610)					coding (343/1794 nt)	PP_2596	ABC transporter permease/ATP‑binding protein

AATCAGCACGGCGCCCACGGTGCGGCCCAGTGTGGTGAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATGCTGGCTGCGATGGCCCGGCCAATGGCGCCCGATGTGGCG  >  NC_002947/2967928‑2968219                                                                                                                                                |                                                                                                                                                     aaTCAGCACGGCGCCCACGGTGCGGCCCAGTGTGGTGAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCt                                                                                                                                                 <  1:354179/149‑1 (MQ=255)              cccACGGTGCGGCCCAGTGTGGTGAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCAc                                                                                                                                    <  4:116624/149‑1 (MQ=255)               ccACGGTGCGGCCCAGTGTGGTGAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTCGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCAcg                                                                                                                                   >  5:4571/1‑149 (MQ=255)                         gCCCAGTGTGGTGAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAggtgat                                                                                                                         >  3:158698/1‑149 (MQ=255)                                    tgAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTgg                                                                                                              >  3:30379/1‑149 (MQ=255)                                     gAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCTCTTGATGCCCGCTCGCAGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGt                                                                                                             >  7:261417/1‑149 (MQ=255)                                     gAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGt                                                                                                             >  2:245302/1‑149 (MQ=255)                                       aaaaGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTCGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGtt                                                                                                            <  6:4571/148‑1 (MQ=255)                                              cgcgGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCt                                                                                                    <  3:105970/149‑1 (MQ=255)                                                             cAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAggtgatgggtgatg                                                                                                                 <  2:133387/121‑1 (MQ=255)                                                             cAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAggtgatgggtgatg                                                                                                                 >  1:133387/1‑121 (MQ=255)                                                               gtgtGCCGATGTCGGCCTGGATGGCCCGTTTCTCTTCGCTTGATGCCCGCTCGCTGAACGAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCAtttag                                                                                   <  8:83112/149‑3 (MQ=255)                                                                     cGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCg                                                                             >  6:224357/1‑149 (MQ=255)                                                                                 gCATGGCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCTCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTc                                                                 <  8:261417/149‑1 (MQ=255)                                                                                      gCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCAt                                                               <  3:304996/146‑1 (MQ=255)                                                                                      gCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCAt                                                               >  4:304996/1‑146 (MQ=255)                                                                                      gCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGc                                                             <  5:224357/148‑1 (MQ=255)                                                                                       cccGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCa                                                           <  5:237540/149‑1 (MQ=255)                                                                                        ccGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAgg                                                                    >  5:40530/1‑139 (MQ=255)                                                                                        ccGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAgg                                                                    <  6:40530/139‑1 (MQ=255)                                                                                           tttCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGgcgaagtgaaacgggccacgcaggacgacatcggcacactgcacagcctgaccgcgcactttttcaccacactgggccgcaccgtgggcgccgtg                                                       <  6:177729‑M2/149‑96 (MQ=255)                                                                                           tttCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGa                                                       <  4:30379/149‑1 (MQ=255)                                                                                               aCTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCAt                                                               <  8:196354/137‑1 (MQ=255)                                                                                               aCTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCAt                                                               >  7:196354/1‑137 (MQ=255)                                                                                               aCTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAg                                                   >  6:169697/1‑149 (MQ=255)                                                                                                 ttCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGc                                                 >  7:91250/1‑149 (MQ=255)                                                                                                      ttGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGgcgaagtgaaacgggccatgcaggacgacatcggca                                                                                                                  <  1:388831‑M2/79‑37 (MQ=255)                                                                                                      ttGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGgcgaagtgaaacgggccatgcaggacgacatcggca                                                                                                                  >  2:388831‑M2/1‑43 (MQ=255)                                                                                                          tGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATgc                                        >  4:60915/1‑149 (MQ=255)                                                                                                           gCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATgct                                       >  4:97450/1‑149 (MQ=255)                                                                                                            cccGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGgcgaagtgaaacgggccatgcaggacgacatcggcacactgcacagcctgaccgcgcactttttcaccacactgggccgcaccgttggcgccgggcggagttccgtggccta                                      <  4:239308‑M2/149‑113 (MQ=255)                                                                                                             ccGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCTCAGGTGATGGTTGATGTGGTTGTCGGCATGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGATGGCGATgctgg                                     >  4:403664/1‑149 (MQ=255)                                                                                                                   gctGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATGCTGGCTGCGa                               >  6:190971/1‑149 (MQ=255)                                                                                                                   gctGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATGCTGGCTGCGa                               <  3:97450/149‑1 (MQ=255)                                                                                                                       aaCCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATGCTGGCTGCGATGGc                           >  5:323892/1‑149 (MQ=255)                                                                                                                          cAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATGCTGGCTGCGATGGCCCg                        >  6:70731/1‑149 (MQ=255)                                                                                                                                aGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATGCTGGCTGCGATGGCCCGGCCAAt                  <  5:70731/149‑1 (MQ=255)                                                                                                                                      aCTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATGCTGGCTGCGATGGCCCGGCCAATGGCGcc            >  3:128844/1‑149 (MQ=255)                                                                                                                                       cTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATGCTGGCTGCGATGGCCCGGCCAATGGCGccc           <  5:190971/149‑1 (MQ=255)                                                                                                                                        ttGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATGCTGGCTGCGATGGCCCGGCCAATGGCGccc           >  7:77448/1‑148 (MQ=255)                                                                                                                                        ttGCATCAGGCCCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGt                                                         <  8:97287/102‑1 (MQ=255)                                                                                                                                        ttGCATCAGGCACTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGt                                                         >  7:97287/1‑102 (MQ=255)                                                                                                                                          gCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATGCTGGCTGCGATGGCCCGGCCAATGGCGCCCGa         <  5:169697/148‑1 (MQ=255)                                                                                                                                                ggCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATGCTGGCTGCGATGGCCCGGCCAATGGCGCCCGATGTGGCg  >  2:82085/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     AATCAGCACGGCGCCCACGGTGCGGCCCAGTGTGGTGAAAAAGTGCGCGGTCAGGCTGTGCAGTGTGCCGATGTCGTCCTGCATGGCCCGTTTCACTTCGCTTGATGCCCGCTCGCTGAACCAGCCGAGCGGCACTTGCATCAGGCGCTGGCCGATCGCCACGCGCAGGTGATGGGTGATGTGGTTGTCGGCCTGGTGCGCCAGCATTTCGGCTGCGGTGATCAGGGTCATGCCAGTGAACAGGCTGGCGATGCTGGCTGCGATGGCCCGGCCAATGGCGCCCGATGTGGCG  >  NC_002947/2967928‑2968219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.