New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3054450	43 (0.670)	5 (0.080)	4/242	NT	10.1%	coding (76/561 nt)	PP_2666	hypothetical protein
	?	NC_002947	= 3054465	48 (0.790)					coding (61/561 nt)	PP_2666	hypothetical protein

GTCGATCAGCACCGGCCGGGGCGTCTGGCCCAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3054298‑3054450 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgACGCTAGGTATCGCCCAGGCTGAC  <  NC_002947/3054465‑3054442                                                                                                                                                                                   GTCGATCAGCACCGGCCGGGGCGTCTGGCCCAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAG                              >  5:271780/1‑149                            GCCGAGCAGGCTTTGCAAAGTGGCGGGGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGACGCTAGGTATCGCCCAGGC      <  7:339073/146‑1                                                                                TGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGACGCTAGGTATCGCCCAGGC      <  3:180239/94‑1                                                                                TGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGACGCTAGGTATCGCCCAGGC      >  4:180239/1‑94                                                                                        GGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGACGCTAGGTATCGCCCAGGCTGAC  <  5:310323/90‑1                                                                                        GGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGACGCTAGGTATCGCCCAGGCTGAC  >  6:310323/1‑90                                                                                                                                                                                   GTCGATCAGCACCGGCCGGGGCGTCTGGCCCAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3054298‑3054450 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgACGCTAGGTATCGCCCAGGCTGAC  <  NC_002947/3054465‑3054442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.