New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3054450	43 (0.670)	5 (0.080)	4/242	NT	10.1%	coding (76/561 nt)	PP_2666	hypothetical protein
	?	NC_002947	= 3054465	48 (0.790)					coding (61/561 nt)	PP_2666	hypothetical protein

GCCCAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGACAGTAAATGCAGTACTAAA  >  NC_002947/3054325‑3054612                                                                                                                                             |                                                                                                                                                    gCCCAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCa                                                                                                                                             <  5:85874/149‑1 (MQ=255)   ccAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGc                                                                                                                                           <  7:3534/149‑1 (MQ=255)            tttGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTTGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTAcc                                                                                                                                  >  6:371278/1‑149 (MQ=255)               gCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGaaa                                                                                                                                       >  1:396289/1‑141 (MQ=255)               gCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGaaa                                                                                                                                       <  2:396289/141‑1 (MQ=255)                  aaGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAg                                                                                                                             >  1:298523/1‑148 (MQ=255)                       gCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAgg                                                                                                                       <  4:161026/149‑1 (MQ=255)                           tgtCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGt                                                                                                                   <  2:298523/149‑1 (MQ=255)                              cgacgaCCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTAcc                                                                                                                                  <  5:330359/131‑1 (MQ=255)                              cgacgaCCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTAcc                                                                                                                                  >  6:330359/1‑131 (MQ=255)                               gacgacCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTgg                                                                                                                 >  3:138951/1‑147 (MQ=255)                               gacgacCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGAGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTgg                                                                                                                 >  8:254672/1‑147 (MQ=255)                                   acCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCg                                                                                                           >  1:161633/1‑149 (MQ=255)                                    ccTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCgg                                                                                                          >  5:266602/1‑149 (MQ=255)                                     cTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCggg                                                                                                         >  2:337860/1‑149 (MQ=255)                                        gccgccTTCGACCTGGTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCgggg                                                                                                        >  2:226417/1‑147 (MQ=255)                                          cgccTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGgggcagg                                                                                                    >  5:135342/1‑149 (MQ=255)                                             cTTCGAGCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCTTTAGCCGTCGGCGGAGAACAGCGGCGGCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGc                                                                                                                                <  8:306076/118‑1 (MQ=255)                                             cTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGc                                                                                                                                >  7:306076/1‑118 (MQ=255)                                                      gTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGAGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATg                                                                                        >  5:189076/1‑149 (MQ=255)                                                       ttGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATgg                                                                                       <  6:266602/149‑1 (MQ=255)                                                          cGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATgggg                                                                                     <  6:402487/148‑1 (MQ=255)                                                           ggggTTGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATgggggg                                                                                   <  5:371278/149‑1 (MQ=255)                                                           ggggTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATgggggg                                                                                   <  6:282125/149‑1 (MQ=255)                                                                        gATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGt                                                                       >  5:336311/1‑148 (MQ=255)                                                                                         tAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTTCATGc                                                     <  6:135342/149‑1 (MQ=255)                                                                                             cGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGt                                                 >  3:27312/1‑149 (MQ=255)                                                                                               tCGGCGGAGCACCGCCGCGCCGTGTCCGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAACGTACCGCCACCTATGGGCGTGGCAGCCGGTGCAGGGCACGTGGCATGGGGGGGGTCCTTTTTGTTATGGACTCATTACATGCCAGTgg                                               <  6:271780/149‑1 (MQ=255)                                                                                                 ggcggAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCg                                             >  6:174917/1‑149 (MQ=255)                                                                                                    ggAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTgg                                                                                                                 <  8:267774/78‑1 (MQ=255)                                                                                                    ggAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTgg                                                                                                                 >  7:267774/1‑78 (MQ=255)                                                                                                     gagaACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGc                                         >  1:30059/1‑149 (MQ=255)                                                                                                        aaCAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCttt                                      >  7:275915/1‑149 (MQ=255)                                                                                                         aCAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTtg                                     >  2:322337/1‑149 (MQ=255)                                                                                                          cAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTtgt                                    <  5:174917/149‑1 (MQ=255)                                                                                                           aGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTtgtg                                   <  2:30059/149‑1 (MQ=255)                                                                                                           aGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTtgt                                    >  7:293972/1‑148 (MQ=255)                                                                                                             ccgcgcCGTGTCACGCTGGGCGAAACCTAGCGTCAGGCTCAGCGAAAGTACCCCCAGCAAACGGCGGGGCAGGCGGGGCAGGGCACGTGGCTTGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGa                                  <  6:189076/146‑1 (MQ=255)                                                                                                                      gtCAGCCTGGGCGATACCTAGCGTcaggctgacacggcgccgctgttctccgccgacggctatcgcaccacgcactatcgcagcccgacc                                                                                   <  5:310323‑M2/90‑67 (MQ=255)                                                                                                                      gtCAGCCTGGGCGATACCTAGCGTcaggctgacacggcgccgctgttctccgccgacggctatcgcaccacgcactatcgcagcccgacc                                                                                   >  6:310323‑M2/1‑24 (MQ=255)                                                                                                                       tCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATa                       <  6:336311/149‑1 (MQ=255)                                                                                                                         aGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGGTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGa                     <  8:293972/149‑1 (MQ=255)                                                                                                                          gCCTGGGCGATACCTAGCGTcaggctgacacggcgccgctgttctccgccgacggctatcgcaccacgcactatcgcagcccgaccccgcaacaggtcgaaggcggccaggtcgtcgaccccgccactttgcaaagcctgctcggc                       <  7:339073‑M2/146‑127 (MQ=255)                                                                                                                          gCCTGGGCGATACCTAGCGTcaggctgacacggcgccgctgttctccgccgacggctatcgcaccacgcactatcgcagcccgaccccgcaaca                                                                           >  4:180239‑M2/1‑20 (MQ=255)                                                                                                                          gCCTGGGCGATACCTAGCGTcaggctgacacggcgccgctgttctccgccgacggctatcgcaccacgcactatcgcagcccgaccccgcaaca                                                                           <  3:180239‑M2/94‑75 (MQ=255)                                                                                                                            cTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGa                     >  8:111402/1‑146 (MQ=255)                                                                                                                            cTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGACa                   <  7:111402/148‑1 (MQ=255)                                                                                                                                  gATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGACAGTAAAt             >  2:171698/1‑148 (MQ=255)                                                                                                                                       cTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCTGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAAt                                <  2:108636/124‑1 (MQ=255)                                                                                                                                       cTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCTGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAAt                                >  1:108636/1‑124 (MQ=255)                                                                                                                                       cTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTtgt                                    <  8:342268/120‑1 (MQ=255)                                                                                                                                       cTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTtgt                                    >  7:342268/1‑120 (MQ=255)                                                                                                                                       cTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAAt                                <  8:191167/124‑1 (MQ=255)                                                                                                                                       cTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAAt                                >  7:191167/1‑124 (MQ=255)                                                                                                                                       cTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGACAGTAAATGCAGTa       >  3:355018/1‑149 (MQ=255)                                                                                                                                            gTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGACAGTAAATGCAGTACTaaa  <  7:254672/149‑1 (MQ=255)                                                                                                                                            gTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGACAGTAAATGCAGTACTaaa  <  8:275915/149‑1 (MQ=255)                                                                                                                                             tCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTAt                                                                    <  2:12055/82‑1 (MQ=255)                                                                                                                                             tCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTAt                                                                    >  1:12055/1‑82 (MQ=255)                                                                                                                                             |                                                                                                                                                    GCCCAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGACAGTAAATGCAGTACTAAA  >  NC_002947/3054325‑3054612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.