New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3054450	43 (0.670)	5 (0.080)	4/242	NT	10.1%	coding (76/561 nt)	PP_2666	hypothetical protein
	?	NC_002947	= 3054465	48 (0.790)					coding (61/561 nt)	PP_2666	hypothetical protein

TCAGCACCGGCCGGGGCGTCTGGCCCAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGACA  >  NC_002947/3054303‑3054595                                                                                                                                                    |                                                                                                                                                  tCAGCACCGGCCGGGGCGTCTGGCCCAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTgg                                                                                                                                                  >  7:156943/1‑149 (MQ=255)   aGCACCGGCCGGGGCGTCTGGCCCAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGc                                                                                                                                                <  4:50339/149‑1 (MQ=255)           ccggGGCGGCTGGCCCAGCAGGCTTTGCAAAGTGGCGGTGGCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGGGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTa                                                                                                                                        <  3:314090/149‑1 (MQ=255)            cggGGCGTCTGGCCCAGCAGGCTTGGCAAAGGGGCGGGGTCGACGACCTGGCCGCCTTCGCCCTGGTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGGCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAg                                                                                                                                       <  3:270865/149‑1 (MQ=255)             ggggCGTCTGGCCCAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGc                                                                                                                                      <  8:156943/149‑1 (MQ=255)                       gCCGAGCAGGCTTTGCAAAGTGGCGGGGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGacgctaggtatcgcccaggc                                                                                                                               <  7:339073‑M1/146‑21 (MQ=255)                       gCCCAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCa                                                                                                                            <  5:85874/149‑1 (MQ=255)                         ccAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGc                                                                                                                          <  7:3534/149‑1 (MQ=255)                                  tttGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTTGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTAcc                                                                                                                 >  6:371278/1‑149 (MQ=255)                                     gCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGaaa                                                                                                                      >  1:396289/1‑141 (MQ=255)                                     gCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGaaa                                                                                                                      <  2:396289/141‑1 (MQ=255)                                        aaGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAg                                                                                                            >  1:298523/1‑148 (MQ=255)                                             gCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAgg                                                                                                      <  4:161026/149‑1 (MQ=255)                                                 tgtCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGt                                                                                                  <  2:298523/149‑1 (MQ=255)                                                    cgacgaCCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTAcc                                                                                                                 >  6:330359/1‑131 (MQ=255)                                                    cgacgaCCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTAcc                                                                                                                 <  5:330359/131‑1 (MQ=255)                                                     gacgacCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTgg                                                                                                >  3:138951/1‑147 (MQ=255)                                                     gacgacCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGAGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTgg                                                                                                >  8:254672/1‑147 (MQ=255)                                                         acCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCg                                                                                          >  1:161633/1‑149 (MQ=255)                                                          ccTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCgg                                                                                         >  5:266602/1‑149 (MQ=255)                                                           cTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCggg                                                                                        >  2:337860/1‑149 (MQ=255)                                                              gccgccTTCGACCTGGTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCgggg                                                                                       >  2:226417/1‑147 (MQ=255)                                                                cgccTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGgggcagg                                                                                   >  5:135342/1‑149 (MQ=255)                                                                   cTTCGAGCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCTTTAGCCGTCGGCGGAGAACAGCGGCGGCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGc                                                                                                               <  8:306076/118‑1 (MQ=255)                                                                   cTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGc                                                                                                               >  7:306076/1‑118 (MQ=255)                                                                           tGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGacgctaggtatcgcccaggc                                                                                                                               >  4:180239‑M1/1‑74 (MQ=255)                                                                           tGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGacgctaggtatcgcccaggc                                                                                                                               <  3:180239‑M1/94‑21 (MQ=255)                                                                            gTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGAGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATg                                                                       >  5:189076/1‑149 (MQ=255)                                                                             ttGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATgg                                                                      <  6:266602/149‑1 (MQ=255)                                                                                cGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATgggg                                                                    <  6:402487/148‑1 (MQ=255)                                                                                 ggggTTGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATgggggg                                                                  <  5:371278/149‑1 (MQ=255)                                                                                 ggggTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATgggggg                                                                  <  6:282125/149‑1 (MQ=255)                                                                                   ggTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGacgctaggtatcgcccaggctgac                                                                                                                           >  6:310323‑M1/1‑66 (MQ=255)                                                                                   ggTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGacgctaggtatcgcccaggctgac                                                                                                                           <  5:310323‑M1/90‑25 (MQ=255)                                                                                              gATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGt                                                      >  5:336311/1‑148 (MQ=255)                                                                                                               tAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTTCATGc                                    <  6:135342/149‑1 (MQ=255)                                                                                                                   cGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGt                                >  3:27312/1‑149 (MQ=255)                                                                                                                     tCGGCGGAGCACCGCCGCGCCGTGTCCGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAACGTACCGCCACCTATGGGCGTGGCAGCCGGTGCAGGGCACGTGGCATGGGGGGGGTCCTTTTTGTTATGGACTCATTACATGCCAGTgg                              <  6:271780/149‑1 (MQ=255)                                                                                                                       ggcggAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCg                            >  6:174917/1‑149 (MQ=255)                                                                                                                          ggAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTgg                                                                                                <  8:267774/78‑1 (MQ=255)                                                                                                                          ggAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTgg                                                                                                >  7:267774/1‑78 (MQ=255)                                                                                                                           gagaACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGc                        >  1:30059/1‑149 (MQ=255)                                                                                                                              aaCAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCttt                     >  7:275915/1‑149 (MQ=255)                                                                                                                               aCAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTtg                    >  2:322337/1‑149 (MQ=255)                                                                                                                                cAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTtgt                   <  5:174917/149‑1 (MQ=255)                                                                                                                                 aGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTtgtg                  <  2:30059/149‑1 (MQ=255)                                                                                                                                 aGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTtgt                   >  7:293972/1‑148 (MQ=255)                                                                                                                                   ccgcgcCGTGTCACGCTGGGCGAAACCTAGCGTCAGGCTCAGCGAAAGTACCCCCAGCAAACGGCGGGGCAGGCGGGGCAGGGCACGTGGCTTGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGa                 <  6:189076/146‑1 (MQ=255)                                                                                                                                            gtCAGCCTGGGCGATACCTAGCGTcaggctgacacggcgccgctgttctccgccgacggctatcgcaccacgcactatcgcagcccgacc                                                                  >  6:310323‑M2/1‑24 (MQ=255)                                                                                                                                            gtCAGCCTGGGCGATACCTAGCGTcaggctgacacggcgccgctgttctccgccgacggctatcgcaccacgcactatcgcagcccgacc                                                                  <  5:310323‑M2/90‑67 (MQ=255)                                                                                                                                             tCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATa      <  6:336311/149‑1 (MQ=255)                                                                                                                                               aGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGGTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGa    <  8:293972/149‑1 (MQ=255)                                                                                                                                                gCCTGGGCGATACCTAGCGTcaggctgacacggcgccgctgttctccgccgacggctatcgcaccacgcactatcgcagcccgaccccgcaacaggtcgaaggcggccaggtcgtcgaccccgccactttgcaaagcctgctcggc      <  7:339073‑M2/146‑127 (MQ=255)                                                                                                                                                gCCTGGGCGATACCTAGCGTcaggctgacacggcgccgctgttctccgccgacggctatcgcaccacgcactatcgcagcccgaccccgcaaca                                                          >  4:180239‑M2/1‑20 (MQ=255)                                                                                                                                                gCCTGGGCGATACCTAGCGTcaggctgacacggcgccgctgttctccgccgacggctatcgcaccacgcactatcgcagcccgaccccgcaaca                                                          <  3:180239‑M2/94‑75 (MQ=255)                                                                                                                                                  cTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGa    >  8:111402/1‑146 (MQ=255)                                                                                                                                                  cTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGACa  <  7:111402/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TCAGCACCGGCCGGGGCGTCTGGCCCAGCAGGCTTTGCAAAGTGGCGGTGTCGACGACCTGGCCGCCTTCGACCTGTTGCGGGGTCGGGCTGCGATAGTGCGTGGTGCGATAGCCGTCGGCGGAGAACAGCGGCGCCGTGTCAGCCTGGGCGATACCTAGCGTCAGGCTCAGCGAAAGTACCGCCAGCAAAGGGCGTGGCAGCCGGGGCAGGGCACGTGGCATGGGGGGGTTCCTTTTTGTTATGGACTCATTACATGCCAGTGGCGGTGCTTTGTGAATGCGACGATAGACA  >  NC_002947/3054303‑3054595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.