New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3464280	32 (0.500)	3 (0.060)	3/206	NT	10.2%	coding (78/1929 nt)	PP_3078	ABC transporter substrate‑binding protein
	?	NC_002947	= 3464319	27 (0.520)					coding (39/1929 nt)	PP_3078	ABC transporter substrate‑binding protein

CGCCCTTGGGGGCGGAGGGGTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGC‑GGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3464111‑3464280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggtttacccgcgaaGAGGCCAGACCAGACAACCTCGTTGCCT‑GCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAAGTATTGTGGGGGCTTGTATTTTCGTGCATAGGCTTTACGGTCCAGGCCGCTCCCACCCACGCCCTTACGGTCTACGGTGAAGCC  <  NC_002947/3464319‑3464172                                                                                                                                                                                                                                                                                                                                  CGCCCTTGGGGGCGTATGGGTTTACATAGTCGAAATGCCGGAAGCTGGCTGCGTAGC‑GTTGGGCTTCACCGTATACCGTAATGGCGTGGTTGGGAGCTGACTGGACCGTAAAGCCTATTCACGAAAATACAAGCCCCCACAATACTTtt                                                                                                                                                                            <  7:67662/149‑3  GCCCTTGGGGGCGGAGGGGTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGC‑GGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTG                                                                                                                                                                           >  8:341768/1‑149   CCCTTGGGGGCGGAGGGGTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGC‑GGGGGGCTTCACCGTAGACCGTAAGGGCGTGTGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGG                                                                                                                                                                          <  4:138001/149‑1        GGGGGCGGAGGGGTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGC‑GGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCG                                                                                                                                                                     >  6:361827/1‑149             CGGAGGGGTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGC‑GGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTT                                                                                                                                                                <  7:341768/149‑1                            AGTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGT                                                                                                                                                                            >  1:66643/1‑123                            AGTCGAAATGCCGGAAGCTGGCGGCGTAGC‑GGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGT                                                                                                                                                                            <  2:66643/122‑1                             GTCGAAATGCCGGAAGCTGGCGGCGTAGC‑GGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGGGC                                                                                                                                                                      <  2:11320/127‑1                             GTCGAAATGCCGGAAGCTGGCGGCGTAGC‑GGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGGGC                                                                                                                                                                      >  1:11320/1‑127                                                   GCGTAGC‑GGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGC                                                                                                                                                          <  2:361075/117‑1                                                   GCGTAGC‑GGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGC                                                                                                                                                          >  1:361075/1‑117                                                                  TTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAA                                                                                                                                                       <  8:342023/106‑1                                                                  TTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAA                                                                                                                                                       >  7:342023/1‑106                                                                    CACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCATAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCT‑GCTCCGACGCATTCGC                                                                                                          <  2:16084/148‑1                                                                     ACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGG                                                                                                                                                                          >  2:331001/1‑84                                                                     ACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGG                                                                                                                                                                          <  1:331001/84‑1                                                                                     GCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCT‑GCTCCGACGCATTCGCGG                                                                                                        <  3:8551/133‑1                                                                                     GCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCT‑GCTCCGACGCATTCGCGG                                                                                                        >  4:8551/1‑133                                                                                                                                                           GCGGGTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCT‑GCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAAGTATTGTGGGGGCTTGTATTTTCGTGCATAGGCTTTACGGTCCAGGCCGCTCCCACCCACGCCCTTAC                  <  2:307783/149‑1                                                                                                                                                               GTTTACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCT‑GCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAAGTATTGTGGGGGCTTGTATTTTCGTGCATAGGCTTTACGGTCCAGGCCGCTCCCACCCACGCCCTTACGGTC              <  1:198298/149‑1                                                                                                                                                                   ACCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCTCTATCCGACGCATTCGCGGGTAAACCCGCTCCCACAAGTATTGTGGGGGCTTGTATTTTCGTGCATAGGCTTTACGGTCCAGGCCGCTCCCACCCACGCCCTTACGGTCTA            <  1:341447/148‑1                                                                                                                                                                    CCCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCT‑GCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAAGTATTGTGGGGGCTTGTATTTTCGTGCATAGGCTTTACGGTCCAGGCCGCTCCCACCCACGCCCTTACGGTCTACG          <  3:129356/148‑1                                                                                                                                                                     CCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCT‑GCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAAGTATTGTGGGGGCTTGTATTTTCGTGCATAGGCTTTACGGTCCAGGCCGCTCCCACCCACGCCCTTACGGTCTACGGT        >  3:112252/1‑149                                                                                                                                                                     CCGCGAAGAGGCCAGACCAGACAACCTCGTTGCCT‑GCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAAGTATTGTGGGGGCTTGTATTTTCGTGCATAGGCTTTACGGTCCAGGCCGCTCCCACCCACGCCCTTACGGTCTACGGT        >  5:361827/1‑149                                                                                                                                                                        CGAAGAGGCCAGACCAGACAACCTCGTTGCCT‑GCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAAGTATTGTGGGGGCTTGTATTTTCGTGCATAGGCTTTACGGTCCAGGCCGCTCCCACCCACGCCCTTACGGTCTACGGTGAA     <  1:372683/149‑1                                                                                                                                                                           AGAGGCCAGACCAGACAACCTCGTTGCCT‑GCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAAGTATTGTGGGGGCTTGTATTTTCGTGCATAGGCTTTACGGTCCAGGCCGCTCCCACCCACGCCCTTACGGTCTACGGTGAAGCC  <  8:46726/149‑1                                                                                                                                                                                                                                                                                                                                  CGCCCTTGGGGGCGGAGGGGTTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGC‑GGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3464111‑3464280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggtttacccgcgaaGAGGCCAGACCAGACAACCTCGTTGCCT‑GCTCCGACGCATTCGCGGGTAAACCCGCTCCCACAAGTATTGTGGGGGCTTGTATTTTCGTGCATAGGCTTTACGGTCCAGGCCGCTCCCACCCACGCCCTTACGGTCTACGGTGAAGCC  <  NC_002947/3464319‑3464172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.