New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3464280	32 (0.500)	3 (0.060)	3/206	NT	10.2%	coding (78/1929 nt)	PP_3078	ABC transporter substrate‑binding protein
	?	NC_002947	= 3464319	27 (0.520)					coding (39/1929 nt)	PP_3078	ABC transporter substrate‑binding protein

GGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTTGACCGGTGCGCTGAA  >  NC_002947/3464172‑3464457                                                                                                                                                     |                                                                                                                                           ggCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCt                                                                                                                                           <  8:46726‑M2/149‑2 (MQ=255)    ttCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcg                                                                                                                                        <  1:372683‑M2/149‑5 (MQ=255)       aCCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgg                                                                                                                                     >  3:112252‑M2/1‑142 (MQ=255)       aCCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgg                                                                                                                                     >  5:361827‑M2/1‑142 (MQ=255)         cGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcggg                                                                                                                                    <  3:129356‑M2/148‑9 (MQ=255)           tAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGATAGAGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggt                                                                                                                                   <  1:341447‑M2/148‑10 (MQ=255)             gACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaac                                                                                                                               <  1:198298‑M2/149‑14 (MQ=255)                 gTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgc                                                                                                                           <  2:307783‑M2/149‑18 (MQ=255)                             gtgggAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAggggg                                                                                                               >  6:99673/1‑149 (MQ=255)                              tgggAGGGCCGTGTACCGTAAAGCATTTGAACTAAAATACAAGCCCCAAAATTACTTGTGGGTGGGGGTTTACCCGATATTGCGTCGGAGC‑TGGAAACGTGTTTGTCTGTTCTGGCCTCTTCGCGGTTAAACCCGCTCCCACAgggggg                                                                                                              <  2:341447/149‑1 (MQ=19)                                          ggACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCgg                                                                                                   >  8:181273/1‑148 (MQ=255)                                            aCCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAg                                                                                                <  5:99673/149‑1 (MQ=255)                                                  aaGCCTATGCACTAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTg                                                                                           <  4:129356/148‑1 (MQ=255)                                                            aCGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTg                                                                                >  5:247140/1‑149 (MQ=255)                                                                     cAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGt                                                                       >  2:290388/1‑149 (MQ=255)                                                                      aaGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAggg                                                                                                                 >  5:422297/1‑106 (MQ=255)                                                                      aaGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAggg                                                                                                                 <  6:422297/106‑1 (MQ=255)                                                                       aGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGCGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCa                                                                     <  1:290388/149‑1 (MQ=255)                                                                        gCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCAc                                                                    >  7:43677/1‑149 (MQ=255)                                                                          ccccACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACtt                                                                  >  6:391235/1‑149 (MQ=255)                                                                            ccACAATACTTGGGTGTGCTGGTTTACCCGCTATTGGGTCGTAGC‑AGTCAACTAGGTTTTCTGGTCTGGCCTCTTTGCGGTTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTcc                                                                <  8:43677/149‑1 (MQ=255)                                                                               caATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGTGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCcagc                                                             <  1:307783/149‑1 (MQ=255)                                                                                        tgGGAGCGGGTTTACCCGCGAATGGGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAg                                                    >  7:371321/1‑149 (MQ=255)                                                                                            aGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAgggg                                                                                                                >  4:251939/1‑85 (MQ=255)                                                                                            aGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAgggg                                                                                                                <  3:251939/85‑1 (MQ=255)                                                                                              cGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAAc                                              <  7:181273/149‑1 (MQ=255)                                                                                                 ttttACCCGGTATTGCGTCGGAGC‑AGGAAACTTGGTTGTTTGGTGTGGCCTTTTCGGGGTTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTgg                                           <  6:247140/148‑1 (MQ=255)                                                                                                       ccGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgc                                                     >  4:8551‑M2/1‑46 (MQ=255)                                                                                                       ccGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgc                                                     <  3:8551‑M2/133‑88 (MQ=255)                                                                                                       ccGCGAATGCATCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGa                                                                                                 <  6:137135/89‑1 (MQ=255)                                                                                                       ccGCGAATGCATCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGa                                                                                                 >  5:137135/1‑89 (MQ=255)                                                                                                         gcgAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttatggtccaggccgctcccacccacgcccttacggtctacggtg                                    <  2:16084‑M2/148‑105 (MQ=255)                                                                                                                 gTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGACACTACCAGCAGGTGGTAGCCGAACTGGTTCTTCACCGGGCCtt                           >  8:153412/1‑149 (MQ=255)                                                                                                                  tCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTg                          <  7:46726/149‑1 (MQ=255)                                                                                                                      aGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACg                      <  8:371321/149‑1 (MQ=255)                                                                                                                              aaCGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTTGa               >  4:204491/1‑149 (MQ=255)                                                                                                                                cGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCgg                                <  2:7360/130‑1 (MQ=255)                                                                                                                                cGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCgg                                >  1:7360/1‑130 (MQ=255)                                                                                                                                        tctggtctggCCTCTTCGCGGGTAAACCGGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTTGACCGGTGCGCt     >  1:228021/1‑149 (MQ=255)                                                                                                                                          tggtctggCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTTGACCGGTGCGCTg    >  1:52893/1‑148 (MQ=255)                                                                                                                                            gtctggCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTTGACCGGTGCGCTGaa  <  2:52893/148‑1 (MQ=255)                                                                                                                                               tggCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGtt                 >  6:182807/1‑130 (MQ=255)                                                                                                                                               tggCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGtt                 <  5:182807/130‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                           GGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGGGCCTTGCACGGTGTTGACCGGTGCGCTGAA  >  NC_002947/3464172‑3464457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.