| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3464280 | 32 (0.500) | 3 (0.060) | 3/206 | NT | 10.2% | coding (78/1929 nt) | PP_3078 | ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 3464319 | 27 (0.520) | coding (39/1929 nt) | PP_3078 | ABC transporter substrate‑binding protein | |||||
GTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGG > NC_002947/3464139‑3464427 | gTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGt < 6:92809/147‑1 (MQ=255)gTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGt > 5:92809/1‑147 (MQ=255) tCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCg > 4:192280/1‑148 (MQ=255) gCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAgg < 3:110440/149‑1 (MQ=255) tGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGc > 1:213194/1‑128 (MQ=255) tGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGc < 2:213194/128‑1 (MQ=255) gcggcgTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTgt > 3:212344/1‑149 (MQ=255) ggcgTAGCGGGGGGCTTCACCGTAGACCGTCAGGGCGTGGGTGGTCGCGGCCTGGACCGTAACGCCTCTGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTgtct < 8:271005/149‑1 (MQ=255) gcgTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTgtctg < 3:192280/149‑1 (MQ=255) ggggggCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGc < 1:227250/149‑1 (MQ=255) ggggggCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGc < 2:40517/149‑1 (MQ=255) ggCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCt < 8:46726‑M2/149‑2 (MQ=255) ttCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcg < 1:372683‑M2/149‑5 (MQ=255) ttCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAA > 7:342023‑M1/1‑106 (MQ=255) ttCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAA < 8:342023‑M1/106‑1 (MQ=255) cACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCATAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgc < 2:16084‑M1/148‑45 (MQ=255) aCCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgg > 5:361827‑M2/1‑142 (MQ=255) aCCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgg > 3:112252‑M2/1‑142 (MQ=255) cGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcggg < 3:129356‑M2/148‑9 (MQ=255) tAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGATAGAGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggt < 1:341447‑M2/148‑10 (MQ=255) gACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaac < 1:198298‑M2/149‑14 (MQ=255) gTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgc < 2:307783‑M2/149‑18 (MQ=255) gCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgg > 4:8551‑M1/1‑87 (MQ=255) gCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgg < 3:8551‑M1/133‑47 (MQ=255) gtgggAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAggggg > 6:99673/1‑149 (MQ=255) tgggAGGGCCGTGTACCGTAAAGCATTTGAACTAAAATACAAGCCCCAAAATTACTTGTGGGTGGGGGTTTACCCGATATTGCGTCGGAGC‑TGGAAACGTGTTTGTCTGTTCTGGCCTCTTCGCGGTTAAACCCGCTCCCACAgggggg < 2:341447/149‑1 (MQ=19) ggACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCgg > 8:181273/1‑148 (MQ=255) gACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGtctggtctgg > 2:299986/1‑102 (MQ=255) gACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGtctggtctgg < 1:299986/102‑1 (MQ=255) aCCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAg < 5:99673/149‑1 (MQ=255) aaGCCTATGCACTAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTg < 4:129356/148‑1 (MQ=255) aCGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTg > 5:247140/1‑149 (MQ=255) cAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGt > 2:290388/1‑149 (MQ=255) aaGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAggg < 6:422297/106‑1 (MQ=255) aaGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAggg > 5:422297/1‑106 (MQ=255) aGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGCGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCa < 1:290388/149‑1 (MQ=255) gCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCAc > 7:43677/1‑149 (MQ=255) ccccACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACtt > 6:391235/1‑149 (MQ=255) ccACAATACTTGGGTGTGCTGGTTTACCCGCTATTGGGTCGTAGC‑AGTCAACTAGGTTTTCTGGTCTGGCCTCTTTGCGGTTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTcc < 8:43677/149‑1 (MQ=255) caATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGTGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCcagc < 1:307783/149‑1 (MQ=255) tgGGAGCGGGTTTACCCGCGAATGGGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAg > 7:371321/1‑149 (MQ=255) aGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAgggg < 3:251939/85‑1 (MQ=255) aGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAgggg > 4:251939/1‑85 (MQ=255) gCGGGTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttac < 2:307783‑M1/149‑133 (MQ=255) cGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAAc < 7:181273/149‑1 (MQ=255) ttttACCCGGTATTGCGTCGGAGC‑AGGAAACTTGGTTGTTTGGTGTGGCCTTTTCGGGGTTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTgg < 6:247140/148‑1 (MQ=255) gTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacggtc < 1:198298‑M1/149‑137 (MQ=255) aCCCGCGAAgaggccagaccagacaacctcgttgcctctatccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacggtcta < 1:341447‑M1/148‑140 (MQ=255) cccGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacggtctacg < 3:129356‑M1/148‑141 (MQ=255) ccGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacggtctacggt > 5:361827‑M1/1‑7 (MQ=255) ccGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacggtctacggt > 3:112252‑M1/1‑7 (MQ=255) ccGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgc > 4:8551‑M2/1‑46 (MQ=255) ccGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgc < 3:8551‑M2/133‑88 (MQ=255) ccGCGAATGCATCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGa < 6:137135/89‑1 (MQ=255) ccGCGAATGCATCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGa > 5:137135/1‑89 (MQ=255) cgcgAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGc < 7:220960/42‑1 (MQ=255) cgcgAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGc > 8:220960/1‑42 (MQ=255) gcgAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttatggtccaggccgctcccacccacgcccttacggtctacggtg < 2:16084‑M2/148‑105 (MQ=255) cgAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacggtctacggtgaa < 1:372683‑M1/149‑146 (MQ=255) agaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacggtctacggtgaagcc < 8:46726‑M1/149‑149 (MQ=255) | GTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGC‑AGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCGG > NC_002947/3464139‑3464427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |