New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3512801 =	57 (0.890)	6 (0.100)	3/242	NT	10.4%	coding (1469/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	3512837 =	49 (0.800)					coding (1505/4158 nt)	PP_3108	rhs family protein

ACCGTCCGGCAAGGTCAGGCCAACCATATTGCCGTGTTCGTCCAGCTCGATGGCGTAACGCTCCCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTCGGCGTTGTACTGCACTTCCAGCTCGCGGCCGAGCACGTCGGTGGCCCAGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3512952‑3512801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctggAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCT  >  NC_002947/3512837‑3512983                                                                                                                                                                                                                                                                                                             ACCGTCCGGCAAGGTCAGGCCAACCATATTGCCGTGTTCGTCCAGCTCGATGGCGTAACGCTCCCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTCGGCGTTGTACTGCACTTCCAGCTCGCGGCCGAGCACGTCGGTGGCCCAG                                                                                                                                                         <  7:206294/148‑1   CGTCCGGCAAGGTCAGGCCAACCATATTGCCGTGTTCGTCCAGCTCGATGGCGTAACGCTCCCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTCGGCGTTGTACTGCACTTCCAGCTCGCGGCCGAGCACGTCGGTGGCCCAGCT                                                                                                                                                       >  3:139230/1‑148   CGTCCGGCAAGGTCAGGCCAACCATATTGCCGTGTTCGTCCAGCTCGATGGCGTAACGCTCCCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTCGGCGTTGTACTGCACTTCCAGCTCGCGGCCGAGCACGTCGGTGGCCCAGCT                                                                                                                                                       <  4:139230/148‑1                                                                                                                 ACTTCCAGCTCGCGGCCAAGTACGTCGGTGGCCCAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGT                                                                                          <  5:313969/99‑1                                                                                                                 ACTTCCAGCTCGCGGCCAAGTACGTCGGTGGCCCAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGT                                                                                          >  6:313969/1‑99                                                                                                                   TTCCAGCTCGCGGCCGAGCACGTCGGTGGCCCAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGATGAACACGGCAATATGGTTGGCCTGACCTTGCCG                                       >  6:220590/1‑148                                                                                                                   TTCCAGCTCGCGGCCAAGTACGTCGGTGGCCCAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCG                                       >  4:312390/1‑148                                                                                                                      CAGCTCGCGGCCGAGCACGTCGGTGGCCCAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACG                                   >  5:111234/1‑149                                                                                                                                            GTGGCCCAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTA             <  6:111234/149‑1                                                                                                                                                   AGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAA      <  7:80762/149‑1                                                                                                                                                       GGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCT  >  2:12579/1‑149                                                                                                                                                        GAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTG                                                     <  7:65307/97‑1                                                                                                                                                        GAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTG                                                     >  8:65307/1‑97                                                                                                                                                                                                                                                                                                             ACCGTCCGGCAAGGTCAGGCCAACCATATTGCCGTGTTCGTCCAGCTCGATGGCGTAACGCTCCCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTCGGCGTTGTACTGCACTTCCAGCTCGCGGCCGAGCACGTCGGTGGCCCAGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3512952‑3512801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctggAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCT  >  NC_002947/3512837‑3512983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.