New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3512801 =57 (0.890)6 (0.100) 3/242 NT 10.4% coding (1469/4158 nt) PP_3108 rhs family protein
?NC_002947 3512837 = 49 (0.800)coding (1505/4158 nt) PP_3108 rhs family protein

GGGCTGGGCTGCCACTACCGTTGGCAAACCCTGGGCGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCT  >  NC_002947/3512689‑3512983
                                                                                                                                                    |                                                                                                                                                   
gggctgggctGCCACTACCGTTGGCAAACCCTGGGCGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGa                                                                                                                                                     <  1:163444/149‑1 (MQ=255)
  gctgggctgCCACTACCGTTGGCAAACCCTGGGCGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAg                                                                                                                                                   >  7:22503/1‑149 (MQ=255)
  gctgggctgCCACTACCGTTGGCAAACCCTGGGCGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAg                                                                                                                                                   <  8:22503/149‑1 (MQ=255)
  cggcaaggtcaggccaaccatattgccgtgttcgtccagctcgatggcgtaacgctcgccgccataatcgcggctggcgaccacgcggtggtcggcgttgtactgcacttCCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGaa                                                                                                                                                    >  4:312390‑M1/111‑148 (MQ=255)
  cggcaaggtcaggccaaccatattgccgtgttcatccagctcgatggcgtaacgctccccgccataatcgcggctggcgaccacgcggtggtcggcgttgtactgcacttCCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGaa                                                                                                                                                    >  6:220590‑M1/111‑148 (MQ=255)
      ggctgCCACTACCGTTGGCAAACCCTGGGCGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTg                                                                                                                                                 >  1:188858/1‑147 (MQ=255)
             aCTACCGTTGGCAAACCCTGGGCGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAAc                                                                                                                                       >  5:281574/1‑149 (MQ=255)
                         aaaCCCTGGGCGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACcgc                                                                                                                           >  1:90656/1‑149 (MQ=255)
                               tGGGCGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGaccac                                                                                                                              >  4:30699/1‑140 (MQ=255)
                               tGGGCGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGaccac                                                                                                                              <  3:30699/140‑1 (MQ=255)
                                  gCGAGAAGCCACGCGTGGTCGAACACTGGACGAGCGACGGCGAGGACTACCTCTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACGGACGTGCTCGGCCGCGAGCTGGAAGTGGAGTACAACGCCGACCACGCGGTGGTCggc                                                                                                                  <  4:200877/149‑3 (MQ=21)
                                  gCGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGc                                                                                                                   >  3:157457/1‑148 (MQ=255)
                                   cGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGt                                                                                                                                             <  3:10086/122‑1 (MQ=255)
                                   cGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGt                                                                                                                                             >  4:10086/1‑122 (MQ=255)
                                       aaGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGc                                                                                                                                     >  6:147772/1‑125 (MQ=255)
                                       aaGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGc                                                                                                                                     <  5:147772/125‑1 (MQ=255)
                                         gCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCcgc                                                                                                            >  6:234696/1‑148 (MQ=255)
                                          ccACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGa                                                                                                          <  2:188858/149‑1 (MQ=255)
                                            aCGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTc                                                                                                                     <  5:384993/136‑1 (MQ=255)
                                            aCGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGAt                                                                                                         >  7:213910/1‑148 (MQ=255)
                                            aCGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGATACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTc                                                                                                                     >  6:384993/1‑136 (MQ=255)
                                                   gTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCg                                                                                                  <  5:234696/148‑1 (MQ=255)
                                                     acgctcgccgccataatcgcggctggcgaccacgcggtggtcggcgttgtactgcacttCCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGt                                                                                                                                                  >  6:313969‑M1/60‑99 (MQ=255)
                                                     acgctcgccgccataatcgcggctggcgaccacgcggtggtcggcgttgtactgcacttCCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGt                                                                                                                                                  <  5:313969‑M1/40‑1 (MQ=255)
                                                      gAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCggg                                                                                                >  7:39/1‑147 (MQ=255)
                                                              gACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACCGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTAc                                                                                       <  1:96312/149‑1 (MQ=255)
                                                              gACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCTGGGAGCGTTAc                                                                                       <  6:296144/148‑1 (MQ=255)
                                                                   gCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATc                                                                                 >  1:202629/1‑149 (MQ=255)
                                                                   gCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATc                                                                                 <  2:202629/149‑1 (MQ=255)
                                                                    ggACGGAGAGCACTACCTCTTCCGCTACGACCTCGATAGCCGCACCAGCTGTGCCACCGACGTGGTCGGCCGCGATCTTGAAGTGCAGTACATCGCCGACCACCGCGTTGTCGCGTGACGCGATTATGGAGGGGAGCTTTACGCAATc                                                                                 <  8:213910/147‑1 (MQ=255)
                                                                     gACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGa                                                                               <  8:39/149‑1 (MQ=255)
                                                                           gAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACcgc                                                                                                                           <  7:63996/99‑1 (MQ=255)
                                                                           gAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACcgc                                                                                                                           >  8:63996/1‑99 (MQ=255)
                                                                            aGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGAc                                                                        <  2:90656/149‑1 (MQ=255)
                                                                                 tACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGAc                                                                        >  6:41723/1‑144 (MQ=255)
                                                                                 tACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGAc                                                                        <  5:41723/144‑1 (MQ=255)
                                                                                 tACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAaca                                                                   >  8:276267/1‑149 (MQ=255)
                                                                                 tACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAaca                                                                   >  3:302767/1‑149 (MQ=255)
                                                                                   ccACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATc                                                                                 <  6:153403/133‑1 (MQ=255)
                                                                                   ccACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATc                                                                                 >  5:153403/1‑133 (MQ=255)
                                                                                           gCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCTCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATg                                                         >  8:261651/1‑149 (MQ=255)
                                                                                           gCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATg                                                         >  7:82001/1‑149 (MQ=255)
                                                                                                 cccTCGCCAGCCCCACCAGCTGGGCCCCCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGc                                                   <  4:302767/148‑1 (MQ=255)
                                                                                                   cTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGAt                                                                                                         >  3:190828/1‑93 (MQ=40)
                                                                                                   cTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGAt                                                                                                         <  4:190828/93‑1 (MQ=40)
                                                                                                      gATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGAc                                              <  7:276267/149‑1 (MQ=37)
                                                                                                       aTAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGAcc                                             >  8:80762/1‑149 (MQ=37)
                                                                                                           ccGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGc                                         <  8:82001/149‑1 (MQ=37)
                                                                                                            acttccagctcgcggccaagtacgtcggtggcccagctggAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGt                                                                                          <  5:313969‑M2/59‑1 (MQ=255)
                                                                                                            acttccagctcgcggccaagtacgtcggtggcccagctggAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGt                                                                                          >  6:313969‑M2/41‑99 (MQ=255)
                                                                                                              ttccagctcgcggccgagcacgtcggtggcccagctggAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGATGAACACGGCAATATGGTTGGCCTGACCTTGCCg                                       >  6:220590‑M2/39‑148 (MQ=255)
                                                                                                              ttccagctcgcggccaagtacgtcggtggcccagctggAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCg                                       >  4:312390‑M2/39‑148 (MQ=255)
                                                                                                               aCCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAg                                                                              <  3:407975/108‑1 (MQ=40)
                                                                                                               aCCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAg                                                                              >  4:407975/1‑108 (MQ=40)
                                                                                                                 cagctcgcggccgagcacgtcggtggcccagctggAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACg                                   >  5:111234‑M2/36‑149 (MQ=255)
                                                                                                                  AGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACg                                   <  4:139230‑M1/148‑1 (MQ=255)
                                                                                                                  AGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACg                                   >  3:139230‑M1/1‑148 (MQ=255)
                                                                                                                    CTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGt                                 <  7:206294‑M1/148‑1 (MQ=255)
                                                                                                                        gCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCg                            <  8:206294/149‑1 (MQ=37)
                                                                                                                         ccACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGTGAGCGTTACGCCATCGAGCTGGACGAACACGGCa                                                              <  1:320800/114‑1 (MQ=25)
                                                                                                                         ccACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGAGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCa                                                              >  2:320800/1‑114 (MQ=255)
                                                                                                                          cACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGcc                          >  5:73857/1‑149 (MQ=37)
                                                                                                                                   gCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTc                  >  7:263430/1‑148 (MQ=35)
                                                                                                                                    cTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCaa                <  8:263430/149‑1 (MQ=34)
                                                                                                                                    cTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGATAACCGCCTGCAATTCaa                <  7:261651/149‑1 (MQ=21)
                                                                                                                                       gtggcccagctggAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTa             <  6:111234‑M2/136‑1 (MQ=255)
                                                                                                                                              agctggAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGaa      <  7:80762‑M2/143‑1 (MQ=255)
                                                                                                                                                  ggAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATtct  >  2:12579‑M2/3‑149 (MQ=255)
                                                                                                                                                   gAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTg                                                     <  7:65307‑M2/96‑1 (MQ=255)
                                                                                                                                                   gAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTg                                                     >  8:65307‑M2/2‑97 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GGGCTGGGCTGCCACTACCGTTGGCAAACCCTGGGCGACAAGCCACGCGTGGTCGAACACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTACGACCTCGATAGCCGCACCAGCTGGGCCACCGACGTGCTCGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCT  >  NC_002947/3512689‑3512983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.