| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3566966 = | 60 (0.940) | 3 (0.050) | 3/240 | NT | 5.6% | coding (569/1050 nt) | PP_3149 | AraC family transcriptional regulator |
| ? | NC_002947 | 3567047 = | 44 (0.730) | coding (650/1050 nt) | PP_3149 | AraC family transcriptional regulator | |||||
GTCCCGCCGCCCCAGGGCCACGCCCTGCAAACGCTGGCTGGCGTTGTCGAGAATGAACAGGCAGTCCTCCAGCAGCTGCTCAGCCAGGGCCTGCCCTTGCAACGGGCAACCCTCCTCGCCCAACCGGGTCAAGGTGGCGCTGAGCCAGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3567117‑3566966‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctgcTGGAGGACTGCCTGTTCATTCTCGACAACGCCAGCCAGCGTTTGCAGGGCGTGGCCCTGGGGCGGCGGGACGAGGAAAGGGCGATCATGCACCGGGTCAGCGAATGGGCGGCCGACTGCCCGGAAGAGACGCTGAACCTGCTT > NC_002947/3567047‑3567189 GTCCCGCCGCCCCAGGGCCACGCCCTGCAAACGCTGGCTGGCGTTGTCGAGAATGAACAGGCAGTCCTCCAGCAGCTGCTCAGCCAGGGCCTGCCCTTGCAACGGGCAACCCTCCTCGCCCAACCGGGTCAAGGTGGCGCTGAGCCAGC > 5:59780/1‑149 TCCCGCCGCCCCAGGGCCACGCCCTGCAAACGCTGGCTGGCGTTGTCGAGAATGAACAGGCAGTCCTCCAGCAGCTGCTCAGCCAGGGCCTGCCCTTGCAACGGGCAACCCTCCTCGCCCAACCGGGTCAAGGTGGCGCTGAGCCAGCT < 5:126658/149‑1 CCGCCGCCCCAGGGCCACGCCCTGCAAACGCTGGCTGGCGTTGTCGAGAATGAACAGGCAGTCCTCCAGCAGCTGCTCAGCCAGGGCCTGCCCTTGCAACGGGCAACCCTCCTCGCCCAACCGGGTCAAGGTGGCGCTGAGCCAGCTGC < 6:152634/149‑1 TCCAGCAGCTGCTCAGCCAGGGCCTGCCCTTGCAACGGGCAACCCTCCTCGCCCAACCGGGTCAAGGTGGCGCTGAGCCAGCTGCTGGAGGACTGCCTGTTCATTCTCGACAACGCCAGCCAGCGTTTGCAGGGCGTGGCCCTGGGGCG > 5:164960/1‑149 AGCAGCTGCTCAGCCAGGGCCTGCCCTTGCAACGGGCAACCCTCCTCGCCCAACCGGGTCAAGGTGGCGCTGAGCCAGCTGCTGGAGGACTGCCTGTTCATTCTCGACAACGCCAGCCAGCGTTTGCAGGGCGTGGCCCTGGGGC > 5:368385/1‑145 AGCAGCTGCTCAGCCAGGGCCTGCCCTTGCAACGGGCAACCCTCCTCGCCCAACCGGGTCAAGGTGGCGCTGAGCCAGCTGCTGGAGGACTGCCTGTTCATTCTCGACAACGCCAGCCAGCGTTTGCAGGGCGTGGCCCTGGGGC < 6:368385/145‑1 AGCTGCTGGAGGACTGCCTGTTCATTCTCGACAACGCCAGCCAGCGTTTGCAGGGCGTGGCCCTGGGGCGGCGGGACGAGGAAAGGGCGATCATGCACCGGGTCAGCGAATGGGCGGCCGACTGCCCGGAAGAGACGCTGAACCTGCTT < 4:129396/149‑1 GCTGCTGGAGGACTGGCTGTTCATTCTCGACAACGCCAGCCAGCGTTTGCAGGGCGTGGCCGTGGGGGGGCGGGACGTGGTAAGTGCGATCATGCACCGGGTCAGCGAATGGGCGGC < 1:226213/117‑1 GCTGCTGGAGGACTGCCTGTTCATTCTCGACAACGCCAGCCAGCGTTTGCAGGCCGTCGCCCTGGGGCGGCTGGACGAGGAAAGGGCGATCATGCACCGGGTCAGCGAATGGGCGGC > 2:226213/1‑117 GTCCCGCCGCCCCAGGGCCACGCCCTGCAAACGCTGGCTGGCGTTGTCGAGAATGAACAGGCAGTCCTCCAGCAGCTGCTCAGCCAGGGCCTGCCCTTGCAACGGGCAACCCTCCTCGCCCAACCGGGTCAAGGTGGCGCTGAGCCAGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3567117‑3566966‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctgcTGGAGGACTGCCTGTTCATTCTCGACAACGCCAGCCAGCGTTTGCAGGGCGTGGCCCTGGGGCGGCGGGACGAGGAAAGGGCGATCATGCACCGGGTCAGCGAATGGGCGGCCGACTGCCCGGAAGAGACGCTGAACCTGCTT > NC_002947/3567047‑3567189 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |