| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3604849 = | 47 (0.730) | 4 (0.070) | 4/244 | NT | 8.2% | coding (69/1041 nt) | PP_3180 | Smp‑30/Cgr1 family protein |
| ? | NC_002947 | 3604934 = | 45 (0.730) | coding (154/1041 nt) | PP_3180 | Smp‑30/Cgr1 family protein | |||||
TTTCACCAAGGTCCGCGCGCGTGTTGGCCACTTTGACCGGCACGTAATTGCATTCCTTGATGCGGCTCCAGCGCTCGGCCACCTGCACACGGTCAAGGTCCCGAGTGTGGCTGACACTGCTGTGTTCGTTGAAGCGGGTGGCGATGTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3605000‑3604849‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGA > NC_002947/3604934‑3605013 TTTCACCAAGGTCCGCGCGCGTGTTGGCCACTTTGACCGGCACGTAATTGCATTCCTTGATGCGGCTCCAGCGCTCGGCCACCTGCACACGGTCAAGGTCCCGAGTGTGGCTGACACTGCTGTGTTCGTTGAAGCGGGTGGCGATGTGC > 2:247373/1‑149TTTCACCAAGGTCCGCGCGCGTGTTGGCCACTTTGACCGGCACGTAATTGCATTCCTTGATGCGGCTCCAGCGCTCAGCCACCTGCACACGGTCAAGGTCCCGAGTGTGGCTGACACTGCTGTGTTCGTTGAAGCGGGTGGCGATGTGC > 4:372744/1‑149 TCACCAAGGTCCGCGCGCGTGTTGGCCACTTTGACCGGCACGTAATTGCATTCCTTGATGCGGCTCCAGCGCTCGGCCACCTGCACACGGTCAAGGTCCCGAGTGTGGCTGACACTGCTGTGTTCGTTGAAGCGGGTGGCGATGTGC < 2:185630/147‑1 GCTCCAGCGCTCGGCCACCTGCACACGGTCAAGGTCCCGAGTGTGGCTGACACTGCTGTGTTCGTTGAAGCGGGTGGCGATGTGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTG > 7:31045/1‑149 CCAGCGCTCGGCCACCTGCACACGGTCAAGGTCCCGAGTGTGGCTGACACTGCTGTGTTCGTTGAAGCGGGTGGCGATGTGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGC > 5:347895/1‑126 CCAGCGCTCGGCCACCTGCACACGGTCAAGGTCCCGAGTGTGGCTGACACTGCTGTGTTCGTTGAAGCGGGTGGCGATGTGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGC < 6:347895/126‑1 CACACGGTCAAGGTCCCGAGTGTGGCTGACACTGCTGTGTTCGTTGAAGCGGGTGGCGATGTGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGA < 8:31045/147‑1 TTTCACCAAGGTCCGCGCGCGTGTTGGCCACTTTGACCGGCACGTAATTGCATTCCTTGATGCGGCTCCAGCGCTCGGCCACCTGCACACGGTCAAGGTCCCGAGTGTGGCTGACACTGCTGTGTTCGTTGAAGCGGGTGGCGATGTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3605000‑3604849‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGA > NC_002947/3604934‑3605013 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |