New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3604849 =	47 (0.730)	4 (0.070)	4/244	NT	8.2%	coding (69/1041 nt)	PP_3180	Smp‑30/Cgr1 family protein
	?	NC_002947	3604934 =	45 (0.730)					coding (154/1041 nt)	PP_3180	Smp‑30/Cgr1 family protein

TTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTGCTGTACTTTGTCGATATCTCTGGCGGGCGCATCAACGGCCT  >  NC_002947/3604788‑3605070                                                                                                                                                   |                                                                                                                                         ttACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGc                                                                                                                                        <  2:140412/149‑1 (MQ=255) caaggtccgcgcgcgtgttggccactttgaccggcacgtaattgcattccttgatgcggctCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGc                                                                                                                                        >  7:31045‑M1/62‑149 (MQ=255)         cTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCCCACGCGGGACCTTGACCGGGTGCAGGTGGCCGAGCGCTGGAGCCGCATc                                                                                                                                  >  1:364640/1‑147 (MQ=255)              cGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACCAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAAt                                                                                                                           <  7:178099/149‑1 (MQ=255)                        tgCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGt                                                                                                                 <  7:279923/149‑1 (MQ=255)                            aTCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAAtt                                                                                                                     <  5:9736/141‑1 (MQ=255)                            aTCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAAtt                                                                                                                     >  6:9736/1‑141 (MQ=255)                            aTCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGACACCCGCTACAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGAGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATCCAATTACGTCCCg                                                                                                             >  1:374526/1‑149 (MQ=255)                                cACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGaa                                                                                                                            <  8:156210/130‑1 (MQ=255)                                cACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGaa                                                                                                                            >  7:156210/1‑130 (MQ=255)                                cACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGa                                                                                                                             >  5:33619/1‑129 (MQ=255)                                cACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGa                                                                                                                             <  6:33619/129‑1 (MQ=255)                                cACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTc                                                                                                          >  7:107834/1‑148 (MQ=255)                                 aCTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCTGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCa                                                                                                         >  3:372744/1‑148 (MQ=255)                                 aCTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAg                                                                                                                               <  2:88415/126‑1 (MQ=255)                                 aCTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAg                                                                                                                               >  1:88415/1‑126 (MQ=255)                                     aTTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGt                                                                                                     <  4:191756/148‑1 (MQ=255)                                     aTTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTg                                                                                                    >  3:191756/1‑149 (MQ=255)                                     aTTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTg                                                                                                    >  1:247373/1‑149 (MQ=255)                                                   gcCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACAcgcgcgc                                                                                      >  1:250101/1‑149 (MQ=255)                                                           tAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACTCTCGGGAGCTTGTCCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCATGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGAGCTTg                                                                              <  2:374526/149‑1 (MQ=255)                                                           gctccagcgctcggccacctgcacacggtcaaggtcccgagtgtggctgacactgctgtgttcgttgaagcgggtggcgatgtgctggAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTg                                                                              >  7:31045‑M2/89‑149 (MQ=255)                                                             gCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGt                                                                            <  8:53078/149‑1 (MQ=255)                                                              ccagcgctcggccacctgcacacggtcaaggtcccgagtgtggctgacactgctgtgttcgttgaagcgggtggcgatgtgctggAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGc                                                                                                  >  5:347895‑M2/86‑126 (MQ=255)                                                              ccagcgctcggccacctgcacacggtcaaggtcccgagtgtggctgacactgctgtgttcgttgaagcgggtggcgatgtgctggAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGc                                                                                                  <  6:347895‑M2/41‑1 (MQ=255)                                                                 GCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCTGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGaaa                                                                        >  4:372744‑M1/1‑149 (MQ=255)                                                                 GCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGaaa                                                                        >  2:247373‑M1/1‑149 (MQ=255)                                                                 GCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGa                                                                          <  2:185630‑M1/147‑1 (MQ=255)                                                                   acaTCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGc                                                                      >  6:124492/1‑149 (MQ=255)                                                                       cGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACAATCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATAACGTGCCGGTCAAAGTGGCCAACACCCGCGCGGACCATGGTGAAAGCCAgg                                                                  >  3:127641/1‑149 (MQ=255)                                                                          cACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGt                                                                            >  8:20944/1‑136 (MQ=255)                                                                          cACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGt                                                                            <  7:20944/136‑1 (MQ=255)                                                                             ccGCTTCAACGAAGACAGCAGTGTCAGCCACACTAGGGACCTTGACGGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTggg                                                            <  4:127641/149‑1 (MQ=255)                                                                             ccGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTg                                                              >  6:15663/1‑147 (MQ=255)                                                                             ccGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTg                                                              <  5:15663/147‑1 (MQ=255)                                                                               gCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGAt                                                          <  8:107834/149‑1 (MQ=255)                                                                                cacacggtcaaggtcccgagtgtggctgacactgctgtgttcgttgaagcgggtggcgatgtgctggAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGa                                                           <  8:31045‑M2/80‑1 (MQ=255)                                                                                 ttCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATg                                                         >  5:347128/1‑148 (MQ=255)                                                                                         acacAGCAGTGGCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAACGCCTGGTCTGGGATGAACGCAGTg                                                <  2:364640/149‑1 (MQ=255)                                                                                           acaGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGc                                              <  1:185630/149‑1 (MQ=255)                                                                                             agcagTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGt                                            >  2:169598/1‑149 (MQ=255)                                                                                              gcagTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTg                                           <  2:250101/149‑1 (MQ=255)                                                                                                  tgtCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTGc                                          <  8:348533/146‑1 (MQ=255)                                                                                                  tgtCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTGc                                          >  7:348533/1‑146 (MQ=255)                                                                                                        ccACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTGCTGTACTTTg                                 <  6:347128/149‑1 (MQ=255)                                                                                                                    ccTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTGCTGTACTTTGTCGATATCTCTg                     >  8:291639/1‑149 (MQ=255)                                                                                                                     cTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTGCTGTACTTTGTCGATATCTCTgg                    >  5:424501/1‑149 (MQ=255)                                                                                                                       tGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTGCTGTACTTTGTCGATATCTCTggcg                  >  3:226249/1‑149 (MQ=255)                                                                                                                        gACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTAc                                                                                                                   <  3:312925/51‑1 (MQ=255)                                                                                                                        gACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTAc                                                                                                                   >  4:312925/1‑51 (MQ=255)                                                                                                                                  aGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTGCTGTACTTTGTCGATATCTCTGGCGGGCGCATCAAc       >  3:123953/1‑149 (MQ=255)                                                                                                                                       gCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTGCTGTACTTTGTCGATATCTCTGGCGGGCGCATCAACGGCCt  <  5:124492/149‑1 (MQ=255)                                                                                                                                        ccGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTGCTGTACTTTGTCGATATCTCTggc                   <  6:401896/131‑1 (MQ=255)                                                                                                                                        ccGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTGCTGTACTTTGTCGATATCTCTggc                   >  5:401896/1‑131 (MQ=255)                                                                                                                                                   |                                                                                                                                         TTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGTGAAAGCCTGGTCTGGGATGAACGCAGTGGCGTGCTGTACTTTGTCGATATCTCTGGCGGGCGCATCAACGGCCT  >  NC_002947/3604788‑3605070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.