New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3604849 =	47 (0.730)	4 (0.070)	4/244	NT	8.2%	coding (69/1041 nt)	PP_3180	Smp‑30/Cgr1 family protein
	?	NC_002947	3604934 =	45 (0.730)					coding (154/1041 nt)	PP_3180	Smp‑30/Cgr1 family protein

AAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGT  >  NC_002947/3604703‑3604996                                                                                                                                                   |                                                                                                                                                    aaaGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGcc                                                                                                                                                    <  3:48332/148‑1 (MQ=255) aaaGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCa                                                                                                                                                   <  8:379184/149‑1 (MQ=255)           gCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGcc                                                                                                                                         >  1:410008/1‑149 (MQ=255)                     ttAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTc                                                                                                                                <  5:373162/148‑1 (MQ=255)                           cATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAAc                                                                                                                             >  8:280974/1‑145 (MQ=255)                           cATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAAc                                                                                                                             <  7:280974/145‑1 (MQ=255)                                   tttttGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGTCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCAcc                                                                                                                                      >  4:165454/1‑128 (MQ=255)                                   tttttGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGTCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCAcc                                                                                                                                      <  3:165454/128‑1 (MQ=255)                                         ttgATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACAcag                                                                                                                     <  7:229417/139‑1 (MQ=255)                                         ttgATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACAcag                                                                                                                     >  8:229417/1‑139 (MQ=255)                                           gATATCGTAAGAAAGGAGAAATGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACACCAGTGTCAGCca                                                                                                         >  8:178099/1‑149 (MQ=255)                                             tatCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACAcagc                                                                                                                    <  7:281017/136‑1 (MQ=255)                                             tatCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACAcagc                                                                                                                    >  8:281017/1‑136 (MQ=255)                                              atCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCcaca                                                                                                       >  2:198406/1‑148 (MQ=255)                                                 gTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTc                                                                                                    <  1:264183/148‑1 (MQ=255)                                                     gAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGAc                                                                                               <  6:241090/149‑1 (MQ=255)                                                        aGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCATACTCGGGACCtt                                                                                            <  2:410008/149‑1 (MQ=255)                                                        aGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCtt                                                                                            <  5:314900/149‑1 (MQ=255)                                                          gagaATTGAAGGTAGCCAGAAATGCCAGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGa                                                                                          >  8:279923/1‑149 (MQ=255)                                                                 gAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCgtgt                                                                                    <  8:104268/148‑1 (MQ=255)                                                                 gAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCgtgt                                                                                    <  3:230447/148‑1 (MQ=255)                                                                   tcccagaccaggctttcaccaaggtccgcgcgcgtgttggccactttgaccggcacgtaattgcattccttgatgcggctCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGtgtg                                                                                   <  8:31045‑M1/67‑1 (MQ=255)                                                                    ggTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAg                                                                                <  1:198406/149‑1 (MQ=255)                                                                          cAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGcc                                                                          <  6:218854/149‑1 (MQ=255)                                                                            gAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCgt                                                                                      >  2:84868/1‑135 (MQ=255)                                                                            gAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCCTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCgt                                                                                      <  1:84868/135‑1 (MQ=255)                                                                                  cccGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCt                                                                   <  4:62115/148‑1 (MQ=255)                                                                                   ccGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTgg                                                                 >  7:53078/1‑149 (MQ=255)                                                                                      ttACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGc                                                              <  2:140412/149‑1 (MQ=255)                                                                                      caaggtccgcgcgcgtgttggccactttgaccggcacgtaattgcattccttgatgcggctCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGc                                                              >  7:31045‑M1/62‑149 (MQ=255)                                                                                              cTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCCCACGCGGGACCTTGACCGGGTGCAGGTGGCCGAGCGCTGGAGCCGCATc                                                        >  1:364640/1‑147 (MQ=255)                                                                                                   cGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACCAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAAt                                                 <  7:178099/149‑1 (MQ=255)                                                                                                          gccactttgaccggcacgtaattgcattccttgatgcggctCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTgg                                                                 >  5:347895‑M1/42‑126 (MQ=255)                                                                                                          gccactttgaccggcacgtaattgcattccttgatgcggctCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTgg                                                                 <  6:347895‑M1/85‑1 (MQ=255)                                                                                                             tgCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGt                                       <  7:279923/149‑1 (MQ=255)                                                                                                                 aTCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAAtt                                           <  5:9736/141‑1 (MQ=255)                                                                                                                 aTCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAAtt                                           >  6:9736/1‑141 (MQ=255)                                                                                                                 aTCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGACACCCGCTACAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGAGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATCCAATTACGTCCCg                                   >  1:374526/1‑149 (MQ=255)                                                                                                                   cccACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCgt                                                                                      <  1:67584/96‑1 (MQ=255)                                                                                                                   cccACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCgt                                                                                      >  2:67584/1‑96 (MQ=255)                                                                                                                    ccACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGAc                                                                                               >  4:242950/1‑86 (MQ=255)                                                                                                                     cACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGaa                                                  <  8:156210/130‑1 (MQ=255)                                                                                                                     cACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGaa                                                  >  7:156210/1‑130 (MQ=255)                                                                                                                     cACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGa                                                   <  6:33619/129‑1 (MQ=255)                                                                                                                     cACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGa                                                   >  5:33619/1‑129 (MQ=255)                                                                                                                     cACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTc                                >  7:107834/1‑148 (MQ=255)                                                                                                                      aCTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCTGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCa                               >  3:372744/1‑148 (MQ=255)                                                                                                                      aCTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAg                                                     >  1:88415/1‑126 (MQ=255)                                                                                                                      aCTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAg                                                     <  2:88415/126‑1 (MQ=255)                                                                                                                          aTTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGt                           <  4:191756/148‑1 (MQ=255)                                                                                                                          aTTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTg                          >  1:247373/1‑149 (MQ=255)                                                                                                                          aTTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTg                          >  3:191756/1‑149 (MQ=255)                                                                                                                                        gcCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACAcgcgcgc            >  1:250101/1‑149 (MQ=255)                                                                                                                                                tAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACTCTCGGGAGCTTGTCCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCATGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGAGCTTg    <  2:374526/149‑1 (MQ=255)                                                                                                                                                  gCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGt  <  8:53078/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    AAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGCGCCAGCAATAGCCAGCACATCGCCACCCGCTTCAACGAACACAGCAGTGTCAGCCACACTCGGGACCTTGACCGTGTGCAGGTGGCCGAGCGCTGGAGCCGCATCAAGGAATGCAATTACGTGCCGGTCAAAGTGGCCAACACGCGCGCGGACCTTGGT  >  NC_002947/3604703‑3604996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.