| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3838238 = | 31 (0.480) | 3 (0.050) | 3/236 | NT | 8.1% | coding (1833/2673 nt) | PP_3388 | hypothetical protein |
| ? | NC_002947 | 3838308 = | 39 (0.660) | coding (1903/2673 nt) | PP_3388 | hypothetical protein | |||||
GCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACCAGCCCAGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3838394‑3838238‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggttgatgCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGACTA > NC_002947/3838308‑3838452 GCGCGCTTTGATGGGCATCAGCATGCCCTCCAGGAGGCACACCAGCACATAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAATCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTG < 7:277190/149‑1GCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACCAGCCCAGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTG < 8:345420/149‑1 CGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACCAGCCCAGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGG < 2:235731/149‑1 GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACCAGCCCAGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGG > 1:221087/1‑149 ACACCAGCCCAGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGAT > 7:322074/1‑118 ACACCAGCCCAGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGAT < 8:322074/118‑1 GCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGG > 7:332653/1‑136 GCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGG < 8:332653/136‑1 CATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTC > 3:374751/1‑148 CCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTG < 5:326217/48‑1 CCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTG > 6:326217/1‑48 GGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGAT > 4:261396/1‑148 GTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGA < 3:83345/149‑1 ATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATAGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGACTA < 2:404320/148‑1 GCGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACCAGCCCAGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3838394‑3838238‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggttgatgCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGACTA > NC_002947/3838308‑3838452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |