New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3838238 = | 31 (0.480) | 3 (0.050) | 3/236 | NT | 8.1% | coding (1833/2673 nt) | PP_3388 | hypothetical protein |
? | NC_002947 | 3838308 = | 39 (0.660) | coding (1903/2673 nt) | PP_3388 | hypothetical protein |
CGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGACTA > NC_002947/3838161‑3838452 | cGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCa < 7:348742/149‑1 (MQ=32) ggCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAg > 3:368930/1‑149 (MQ=32) cctccagcaggcacaccagcccagaaacacgcactttgtagaagtcactgttccgggcctgCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGc < 8:332653‑M1/75‑1 (MQ=255) cctccagcaggcacaccagcccagaaacacgcactttgtagaagtcactgttccgggcctgCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGc > 7:332653‑M1/62‑136 (MQ=255) aGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGcc < 5:403423/148‑1 (MQ=34) aGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGcc < 6:123605/148‑1 (MQ=34) gAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCctgct > 6:155777/1‑149 (MQ=34) cTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCctgc < 4:125343/144‑1 (MQ=34) cTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCctgc > 3:125343/1‑144 (MQ=34) gCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAggg > 8:151584/1‑149 (MQ=34) aCGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGa > 6:95004/1‑149 (MQ=34) aGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGGGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCt > 3:83635/1‑149 (MQ=21) gcctgcatcaacccttcagcccaagcctggtcgaggtaccttgatacctggcctgcgctgcgttgtgggttgatgCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAgg > 7:332653‑M2/76‑136 (MQ=255) gcctgcatcaacccttcagcccaagcctggtcgaggtaccttgatacctggcctgcgctgcgttgtgggttgatgCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAgg < 8:332653‑M2/61‑1 (MQ=255) aGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGcc < 4:368930/149‑1 (MQ=34) ccATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGc > 3:225328/1‑138 (MQ=34) ccATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGc < 4:225328/138‑1 (MQ=34) ccATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGcc < 8:204179/146‑1 (MQ=34) ccATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGcc > 7:204179/1‑146 (MQ=34) ccATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTc < 4:335248/149‑1 (MQ=34) ccATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTc < 5:155777/149‑1 (MQ=34) catcaacccttcagcccaagcctggtcgaggtaccttgatacctggcctgcgctgcgttgtgggttgatgCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTc > 3:374751‑M2/71‑148 (MQ=255) ATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGgtgt > 7:322074‑M1/1‑118 (MQ=255) ATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGgtgt < 8:322074‑M1/118‑1 (MQ=255) CCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAgcgc > 1:221087‑M1/1‑149 (MQ=255) CCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAgcgcg < 2:235731‑M1/149‑1 (MQ=255) CACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAgcgcgc < 8:345420‑M1/149‑1 (MQ=255) CACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGATTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTATGTGCTGGTGTGCCTCCTGGAGGGCATGCTGATGCCCATCAAAgcgcgc < 7:277190‑M1/149‑1 (MQ=255) cagcgcagGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGc < 4:83635/149‑1 (MQ=37) cagcgcagGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTACAAAGCGCGCGAATTGc < 4:69394/149‑1 (MQ=37) cgcagGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCt > 7:44744/1‑148 (MQ=37) gcagGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGa < 7:123753/149‑1 (MQ=37) gcagGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGa > 6:402539/1‑149 (MQ=37) aGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGAt < 7:345420/149‑1 (MQ=37) aGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGAt > 4:257908/1‑149 (MQ=37) gTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTg > 3:235844/1‑139 (MQ=37) gTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTg < 4:235844/139‑1 (MQ=37) gTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATgc < 1:129477/149‑1 (MQ=37) aaGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCgg < 7:151584/148‑1 (MQ=37) aGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGt < 5:402539/149‑1 (MQ=37) ggTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGTCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGt > 1:123600/1‑148 (MQ=37) gTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCAGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCggg > 1:378489/1‑146 (MQ=37) gTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCAGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCggg < 2:378489/146‑1 (MQ=37) aCCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATAGCCTGACAGTGATGCGCGGGTg > 1:404320/1‑146 (MQ=37) ccTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGGGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGa < 5:224078/149‑1 (MQ=37) tCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTTTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGAcc > 7:292100/1‑149 (MQ=37) tCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTTTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGAcc > 7:297697/1‑149 (MQ=37) tCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGAcc > 4:83345/1‑149 (MQ=37) gACCTGGCTTGGTCTGAAGGGTTGATGCAGGCCCGGATGAGTGACTTCTACTATGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGGGGGTGAAGAcc < 8:277190/147‑1 (MQ=11) aGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATgcgc < 3:279475/132‑1 (MQ=37) aGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATgcgc > 4:279475/1‑132 (MQ=37) gggCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTgg < 1:235731/147‑1 (MQ=39) tGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCcg > 5:162242/1‑149 (MQ=39) gAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTg > 2:348333/1‑141 (MQ=39) gAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTg < 1:348333/141‑1 (MQ=39) ggttgatgCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGAt > 4:261396‑M2/9‑148 (MQ=255) gttgatgCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGa < 3:83345‑M2/142‑1 (MQ=255) atgCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATAGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGACTa < 2:404320‑M2/145‑1 (MQ=255) | CGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGACTA > NC_002947/3838161‑3838452 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |