New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3838238 =	31 (0.480)	3 (0.050)	3/236	NT	8.1%	coding (1833/2673 nt)	PP_3388	hypothetical protein
	?	NC_002947	3838308 =	39 (0.660)					coding (1903/2673 nt)	PP_3388	hypothetical protein

TCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTC  >  NC_002947/3838090‑3838385                                                                                                                                                      |                                                                                                                                                    tCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGccc                                                                                                                                                     <  1:144763/149‑1 (MQ=39)     tagtcatcgcggccgccagaagttcggtcttcacccgcgcatcactgtcaggctattcgcgcgctttgaaggccatcagcatcccctccagcaggcacaccagcccagaaacacgcactttgtagaagtcactgttccgggcctgCAt                                                                                                                                                   <  2:404320‑M1/3‑1 (MQ=255)      cTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCaa                                                                                                                                                <  3:59107/149‑1 (MQ=38)        tcatcgcggccgccagaagttcggtcttcacccgcgcatcactgtcaggcaattcgcgcgctttgaaggccatcagcatcccctccagcaggcacaccagcccagaaacacgcactttgtagaagtcactgttccgggcctgCATCAAc                                                                                                                                               <  3:83345‑M1/7‑1 (MQ=255)          atcgcggccgccagaagttcggtcttcacccgcgcatcactgtcaggcaattcgcgcgctttgaaggccatcagcatcccctccagcaggcacaccagcccagaaacacgcactttgtagaagtcactgttccgggcctgCATCAAcc                                                                                                                                              >  4:261396‑M1/141‑148 (MQ=255)                      tgcGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAAcgcagcg                                                                                                                                  >  5:123605/1‑147 (MQ=37)                             cGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAgg                                                                                                                         >  3:151121/1‑149 (MQ=37)                               ccACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTa                                                                                                                       >  4:331012/1‑149 (MQ=35)                                 aCCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTAt                                                                                                                      >  3:384393/1‑148 (MQ=34)                                     ccAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAgg                                                                                                                 >  3:152240/1‑149 (MQ=34)                                      cAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGt                                                                                                                <  2:328023/149‑1 (MQ=34)                                      cAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGt                                                                                                                <  3:331012/149‑1 (MQ=34)                                      cAACAGCATGGACCGCGCGCTGCACCAGGATTTGCGGCTGAATTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAACCTGCACGTAGCGGGC‑AGCCCAACAACCCACAACGCCGCGCAGGCCAGGAAACAAgg                                                                                                                 >  8:259630/1‑148 (MQ=11)                                           gCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCt                                                                                                            <  1:85819/149‑1 (MQ=21)                                                   cgcgcgCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGt                                                                                                                        <  1:111582/128‑1 (MQ=35)                                                   cgcgcgCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGt                                                                                                                        >  2:111582/1‑128 (MQ=35)                                                      gcgcTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTg                                                                                                >  1:109920/1‑149 (MQ=34)                                                        gcTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTggg                                                                                              <  4:152240/149‑1 (MQ=32)                                                        gcTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTggg                                                                                              <  2:109920/149‑1 (MQ=32)                                                               cAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAgg                                                                                       >  3:299748/1‑149 (MQ=32)                                                                  ggTTTGGGGCTGACTTTTTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACATCGCAGCGCAGGCCAGGTATCAAGGTACCTTGACCAGGCTTGGGCTGAAGGGtt                                                                                    <  7:259630/149‑1 (MQ=255)                                                                     ttGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAgg                                                                                                    <  3:231303/130‑1 (MQ=32)                                                                     ttGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAgg                                                                                                    >  4:231303/1‑130 (MQ=32)                                                                        gaaggccatcagcatcccctccagcaggcacaccagcccagaaacacgcactttgtagaagtcactgttccgggcctgCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATg                                                                                >  3:374751‑M1/79‑148 (MQ=255)                                                                        cGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCa                                                                              <  7:348742/149‑1 (MQ=32)                                                                         ggCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAg                                                                             >  3:368930/1‑149 (MQ=32)                                                                            tGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCt                                                                                                            <  2:409780/115‑1 (MQ=32)                                                                            tGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCt                                                                                                            >  1:409780/1‑115 (MQ=32)                                                                                         cctccagcaggcacaccagcccagaaacacgcactttgtagaagtcactgttccgggcctgCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGc                                                                           >  7:332653‑M1/62‑136 (MQ=255)                                                                                         cctccagcaggcacaccagcccagaaacacgcactttgtagaagtcactgttccgggcctgCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGc                                                                           <  8:332653‑M1/75‑1 (MQ=255)                                                                                                                           aGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGcc                            <  5:403423/148‑1 (MQ=34)                                                                                                                           aGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGcc                            <  6:123605/148‑1 (MQ=34)                                                                                                                              gAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCctgct                        >  6:155777/1‑149 (MQ=34)                                                                                                                                  cTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCctgc                         <  4:125343/144‑1 (MQ=34)                                                                                                                                  cTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCctgc                         >  3:125343/1‑144 (MQ=34)                                                                                                                                    gCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAggg                  >  8:151584/1‑149 (MQ=34)                                                                                                                                      aCGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGa                >  6:95004/1‑149 (MQ=34)                                                                                                                                          aGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGGGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCt            >  3:83635/1‑149 (MQ=21)                                                                                                                                                  aGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGcc     <  4:368930/149‑1 (MQ=34)                                                                                                                                                     ccATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGc             <  4:225328/138‑1 (MQ=34)                                                                                                                                                     ccATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGc             >  3:225328/1‑138 (MQ=34)                                                                                                                                                     ccATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGcc     >  7:204179/1‑146 (MQ=34)                                                                                                                                                     ccATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGcc     <  8:204179/146‑1 (MQ=34)                                                                                                                                                     ccATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTc  <  4:335248/149‑1 (MQ=34)                                                                                                                                                     ccATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTc  <  5:155777/149‑1 (MQ=34)                                                                                                                                                      |                                                                                                                                                    TCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGC‑AGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTC  >  NC_002947/3838090‑3838385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.