| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3886896 | 51 (0.800) | 5 (0.080) | 4/244 | NT | 7.9% | coding (961/2118 nt) | PP_3430 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | = 3886952 | 67 (1.090) | coding (905/2118 nt) | PP_3430 | two‑component system sensor histidine kinase/response regulator | |||||
CTCCAGCCGCCCCTCCTGCAGGCGCCGCTGCAGCAGTTCGAGGCTGCCGCCGATACCGGACAGCAAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3886744‑3886896‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacgGCAGCCTCCTGACGGCGGTTGGCCGGGACATCACCGCAGACCGTGAAGAGGCTGCGCGTCAGGCAGAGGCGCTGATGCACAACAGTGAGCGTATGGAGGTGGTGGGCCAGTTGGCGGGCGGCATGGGCCATGAAATGAACAACTT < NC_002947/3886952‑3886808 CTCCAGCCGCCCCTCCTGCAGGCGCCGCTGCAGCAGTTCGAGGCTGCCGCCGATACCGGACAGCAAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCT > 7:296163/1‑149 TCCAGCCGCCCCTCCTGCAGGCGCCGCTGCAGCAGTTCGAGGCTGCCGCCGATACCGGACAGCAAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCT > 1:284183/1‑148 CAGCCGCCCCTCCTGCAGGCGCCGCTGCAGCAGTTCGAGGCTGCCGCCGATACCGGACAGCAAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGAC > 7:193511/1‑149 AGCCGCCCCTCCTGCAGGCGCCGCTGCAGCAGTTCGAGGCTGCCGCCGATACCGGACAGCAAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACG > 8:262379/1‑149 CCCTCCTGCAGGCGCCGCTGCAGCAGTTCGAGGCTGCCGCCGATACCGGTCAGCAAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGGCAGCC > 3:152799/1‑149 GTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGGCAGCCTCCTGACGGCGGTTGGCCGGGACATCACCGCAGACCGTGAAGAGGCTGCGCGTCAG < 3:212843/149‑1 GTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGGCAGCCTCCTGACGGCGGTTGGCCGGGACATCACCGCAGACCGTGAAGAGGCTGCGCGTCAG < 4:152799/149‑1 CCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGGCAGCCTCCTGACGGCGGTTGGCCGGGACATCACCGCAGACCGTGAAGAGGCTGC < 3:43745/126‑1 CCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGGCAGCCTCCTGACGGCGGTTGGCCGGGACATCACCGCAGACCGTGAAGAGGCTGC > 4:43745/1‑126 ACGGCAGCCTCCTGACGGCGGTTGGCCGGGACATCACCGCAGACCGTGAAGAGGCTGCGCGTCAGGCAGAGGCGCTGATGCACAACAGTGAGCGTATGGAGGTGGTGGGCCAGTTGGCGGGCGGCATGGGCCATGAAATGAACAACTT < 1:121240/148‑1 CTCCAGCCGCCCCTCCTGCAGGCGCCGCTGCAGCAGTTCGAGGCTGCCGCCGATACCGGACAGCAAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3886744‑3886896‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacgGCAGCCTCCTGACGGCGGTTGGCCGGGACATCACCGCAGACCGTGAAGAGGCTGCGCGTCAGGCAGAGGCGCTGATGCACAACAGTGAGCGTATGGAGGTGGTGGGCCAGTTGGCGGGCGGCATGGGCCATGAAATGAACAACTT < NC_002947/3886952‑3886808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |