New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4017940 =	52 (0.810)	3 (0.050)	3/238	NT	5.8%	coding (375/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4017980 =	49 (0.820)					coding (415/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator

CTGGCCGACCGCCTCCATCTTCTGCGCCTGGCGCAGTGCTTCTTCGGCCTGCTGCAGGCGTTCCTGTTCGGTCACGCGCTGCGTGATGTCATAGGCGAACAGGTAGCCGCCCTGAATTCGCTGCTGAGCATCGAGCCACGGGTGGTAGCGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4018093‑4017940 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgaattCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGCGGTCGGCCAGTTGACCGGCGGGATTGCCCATGATTTCAA  >  NC_002947/4017980‑4018122                                                                                                                                                                                                                                                                                                           CTGGCCGACCGCCTCCATCTTCTGCGCCTGGCGCAGTGCTTCTTCGGCCTGCTGCAGGCGTTCCTGTTCGGTCACGCGCTGCGTGATGTCATAGGCGAACAGGTAGCCGGCCTGAATTCGCTGCTGAGGATCGAGCCACGGGTGGTAGC                                                                                                                                                      <  5:104291/149‑1                                     TGCTTCTTCGGCCTGCTGCAGGCGTTCCTGTTCGGTCACGCGCTGCGTGATGTCATAGGCGAACAGGTAGCCGCCCTGAATTCGCTGCTGAGCATCGAGCCACGGGTGGTAGCGAA                                                                                                                                                   >  5:367398/1‑116                                     TGCTTCTTCGGCCTGCTGCAGGCGTTCCTGTTCGGTCACGCGCTGCGTGATGTCATAGGCGAACAGGTAGCCGCCCTGAATTCGCTGCTGAGCATCGAGCCACGGGTGGTAGCGAA                                                                                                                                                   <  6:367398/116‑1                                                                                                             GCCCTGAATTCGCTGCTGAGCATCGAGCCACGGGTGGTAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGG                                          >  5:78917/1‑149                                                                                                              CCCTGAATTCGCTGCTGAGCATCGAGCCACGGGTGGTAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGC                                         >  3:90933/1‑149                                                                                                                   AATTCGCTGCTGAGCATCGAGCCACGGGTGGTAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGCGGTC                                     <  6:78917/148‑1                                                                                                                                                     CGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGCGGTCGGCCAGTTGACCGGCGGGATTGCCCATGATTTCAA  >  1:353260/1‑149                                                                                                                                                     CGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGCGGTCGGCCAGTTGACCGGCGGGATTGCCCATGATTTCAA  <  7:284990/149‑1                                                                                                                                                                                                                                                                                                           CTGGCCGACCGCCTCCATCTTCTGCGCCTGGCGCAGTGCTTCTTCGGCCTGCTGCAGGCGTTCCTGTTCGGTCACGCGCTGCGTGATGTCATAGGCGAACAGGTAGCCGCCCTGAATTCGCTGCTGAGCATCGAGCCACGGGTGGTAGCGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4018093‑4017940 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgaattCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGCGGTCGGCCAGTTGACCGGCGGGATTGCCCATGATTTCAA  >  NC_002947/4017980‑4018122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.