New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4017940 =	52 (0.810)	3 (0.050)	3/238	NT	5.8%	coding (375/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4017980 =	49 (0.820)					coding (415/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator

GCAGGTTGGCGACTACGTACCCCAGTTCCTGACCGATCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGCGGT  >  NC_002947/4017793‑4018086                                                                                                                                                      |                                                                                                                                                    gCAGGTTGGCGACTACGTACCCCAGTTCCTGACCGATCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGaaa                                                                                                                                                    <  3:364665/149‑1 (MQ=255)       ttgaaatcatgggcaatcccgccggtcaactggccgaccgcctccatcttctgcgcctggcgcagtgcttcttcggcctgctgcaggcgttcctgttcggtcacgcgctgcgtgatgtcataggcgaacaggtagccgccctgAATTCg                                                                                                                                                <  7:284990‑M1/6‑1 (MQ=255)       ttgaaatcatgggcaatcccgccggtcaactggccgaccgcctccatcttctgcgcctggcgcagtgcttcttcggcctgctgcaggcgttcctgttcggtcacgcgctgcgtgatgtcataggcgaacaggtagccgccctgAATTCg                                                                                                                                                >  1:353260‑M1/144‑149 (MQ=255)                  tACCCCAGTTCCTGACCGATCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCg                                                                                                                                                >  2:43590/1‑136 (MQ=255)                  tACCCCAGTTCCTGACCGATCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCg                                                                                                                                                <  1:43590/136‑1 (MQ=255)                  tACCCCAGTTCCTGACCGATCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTgg                                                                                                                                   <  5:320390/149‑1 (MQ=255)                      ccAGTTCCTGACCGATCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGTTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCg                                                                                                                               <  1:96950/149‑1 (MQ=255)                                  cGATCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGGAAGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTcagcag                                                                                                                   >  1:318376/1‑149 (MQ=255)                                  cGATCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGTCTCG‑ATGCTCagcagc                                                                                                                  <  3:62971/149‑1 (MQ=255)                                  cGATCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTcagca                                                                                                                    <  1:236396/147‑1 (MQ=255)                                  cGATCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTcagca                                                                                                                    >  2:236396/1‑147 (MQ=255)                                  cGATCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCagcagc                                                                                                                  >  3:90168/1‑149 (MQ=255)                                    aTCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTACATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAAtt                                                                                                                                                  <  6:150105/116‑1 (MQ=255)                                    aTCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTACATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAAtt                                                                                                                                                  >  5:150105/1‑116 (MQ=255)                                     tCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGaa                                                                                                               <  4:90168/149‑1 (MQ=255)                                       aaCCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAAtt                                                                                                             <  3:81832/149‑1 (MQ=255)                                         cccGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTa                                                                                                                                             <  1:139824/116‑1 (MQ=255)                                         cccGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTa                                                                                                                                             >  2:139824/1‑116 (MQ=255)                                          gaccgcctccatcttctgcgcctggcgcagtgcttcttcggcctgctgcaggcgttcctgttcggtcacgcgctgcgtgatgtcataggcgaacaggtagccgccctgAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAAtt                                                                                                             <  6:78917‑M1/40‑1 (MQ=255)                                          ccGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAg                                                                                                          <  1:375337/149‑1 (MQ=255)                                              gcctccatcttctgcgcctggcgcagtgcttcttcggcctgctgcaggcgttcctgttcggtcacgcgctgcgtgatgtcataggcgaacaggtagccgccctgAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAggg                                                                                                        >  3:90933‑M1/105‑149 (MQ=255)                                               cctccatcttctgcgcctggcgcagtgcttcttcggcctgctgcaggcgttcctgttcggtcacgcgctgcgtgatgtcataggcgaacaggtagccgccctgAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGggc                                                                                                       >  5:78917‑M1/104‑149 (MQ=255)                                                 catGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGggcggc                                                                                                    >  8:363995/1‑148 (MQ=255)                                                   tGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTAc                                                                                                 <  7:363995/149‑1 (MQ=255)                                                   tGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTAc                                                                                                 <  4:223805/149‑1 (MQ=255)                                                      gccgccTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTg                                                                                              >  4:292193/1‑149 (MQ=255)                                                        cgccTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGtt                                                                                            >  7:181633/1‑149 (MQ=255)                                                               ccccGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTAt                                                                                     >  7:154241/1‑149 (MQ=255)                                                               ccccGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTAt                                                                                     >  4:90268/1‑149 (MQ=255)                                                               ccccGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTAt                                                                                     <  8:181633/149‑1 (MQ=255)                                                                cccGATATGGCCGCGCATACTGGCAGG‑GGAAGGCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTAt                                                                                     >  1:250495/1‑149 (MQ=255)                                                                cccGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAgg                                                                                                         <  7:303837/128‑1 (MQ=255)                                                                cccGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAgg                                                                                                         >  8:303837/1‑128 (MQ=255)                                                                 ccGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGa                                                                                   <  6:23715/149‑1 (MQ=255)                                                                  cGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGAc                                                                                  <  8:154241/149‑1 (MQ=255)                                                                        ggCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACg                                                                            >  4:320986/1‑149 (MQ=255)                                                                         gCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACg                                                                            >  1:148555/1‑148 (MQ=255)                                                                                aTACTGGCAGG‑CGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGt                                                                    >  4:103933/1‑149 (MQ=255)                                                                                   cTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGTACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCGCTGCGTGat                                                                 <  3:292193/149‑2 (MQ=255)                                                                                    tGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTAc                                                                                                 >  7:84293/1‑116 (MQ=255)                                                                                    tGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTAc                                                                                                 <  8:84293/116‑1 (MQ=255)                                                                                    tGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGa                                                                                   <  5:294641/130‑1 (MQ=255)                                                                                    tGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGa                                                                                   >  6:294641/1‑130 (MQ=255)                                                                                     ggCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑At                                                                                                                            <  2:244124/88‑1 (MQ=255)                                                                                     ggCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑At                                                                                                                            >  1:244124/1‑88 (MQ=255)                                                                                      gCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGAcc                                                                <  5:12760/147‑1 (MQ=255)                                                                                      gCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCg                                                               >  1:208649/1‑148 (MQ=255)                                                                                               a‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAAc                                                      <  3:90268/149‑1 (MQ=255)                                                                                               a‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAAc                                                      <  2:250495/149‑1 (MQ=255)                                                                                                   gTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGcc                                                   >  6:174455/1‑149 (MQ=255)                                                                                                             acCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGc                                         >  8:284026/1‑149 (MQ=255)                                                                                                                gTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGa                                                                                   <  3:256600/104‑1 (MQ=255)                                                                                                                gTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGa                                                                                   >  4:256600/1‑104 (MQ=255)                                                                                                                 tCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCgaa                                     <  2:208649/149‑1 (MQ=255)                                                                                                                         gggCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCGTATGCTCCGCAGCGAATTCCGGGCGCCTACCTGTTCGCCTATGACATCACGCACCGCGTCACCGAACAGGAACGCCTGCACCAGCCCGAAGAAGCAc                              >  1:102226/1‑149 (MQ=255)                                                                                                                               gacgacGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGcc                        <  5:174455/148‑1 (MQ=255)                                                                                                                                  gacgCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCGCTGCGTGatg                                                                >  6:152384/1‑103 (MQ=255)                                                                                                                                  gacgCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCGCTGCGTGatg                                                                <  5:152384/105‑3 (MQ=255)                                                                                                                                    cgCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGgcgc                  <  7:284026/149‑1 (MQ=255)                                                                                                                                       accacGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑AAGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGAGTGACCGAACAgg                                                         >  1:257444/1‑107 (MQ=255)                                                                                                                                                 tACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGc     >  1:220791/1‑149 (MQ=255)                                                                                                                                                 tACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGc     >  4:226117/1‑149 (MQ=255)                                                                                                                                                   cGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGc     <  2:364312/147‑1 (MQ=255)                                                                                                                                                   cGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGCgg   >  1:20966/1‑149 (MQ=255)                                                                                                                                                   cGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGCgg   >  2:19296/1‑149 (MQ=255)                                                                                                                                                    gAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGCGGt  >  2:96548/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                    GCAGGTTGGCGACTACGTACCCCAGTTCCTGACCGATCAACCCGACATCATGGGCCGCCTGGCCCCGATATGGCCGCGCATACTGGCAGG‑GGAA‑GCGTTCATCGACACCGTCACCTTCGGGCTGGACGACGCACCACGCCACTACGAAATTCGCTACCACCCGTGGCTCG‑ATGCTCAGCAGCGAATTCAGGGCGGCTACCTGTTCGCCTATGACATCACGCAGCGCGTGACCGAACAGGAACGCCTGCAGCAGGCCGAAGAAGCACTGCGCCAGGCGCAGAAGATGGAGGCGGT  >  NC_002947/4017793‑4018086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.