New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4893553 =	54 (0.840)	3 (0.060)	3/200	NT	8.8%	intergenic (+28/‑180)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	4893632 =	20 (0.400)					intergenic (+107/‑101)	pyk/PP_4302	pyruvate kinase/urea transporter

TCAGTGGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGG‑CCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4893725‑4893553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACGG  >  NC_002947/4893632‑4893778                                                                                                                                                                                                                                                                                                                                   TCAGTGGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAAG‑CCCCGCCCCCAGGGCCGGCATTTCCATGTGGCAGCGTGGCCC                                                                                                                                                                             >  3:405535/1‑149   AGTGGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGG‑CCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTG                                                                                                                                                                           >  2:296746/1‑149      GGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGCCACAAGG‑CCGCTCCCACAGGGACTGCATTGCCTTGTGCCCGCGTGGCCCGGTGG                                                                                                                                                                        >  3:232204/1‑149      GGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGG‑CCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGG                                                                                                                                                                        >  1:104723/1‑149       GAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTG                                                                                                                                                                         <  1:296746/148‑1       GAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGG‑CCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGT                                                                                                                                                                          >  8:212141/1‑146       GAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGG‑CCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGT                                                                                                                                                                          <  7:212141/146‑1        AGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGG‑TCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGA                                                                                                                                                                      <  1:138307/149‑1            TGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCGGCGGTCGGGTAGAGCGGTATTCAGGCAGGGCTTTGCCCTCCAAACCCGACACAAGG‑CCCCTACCACAGGGACTGAATTCCCTTGTGCCAGCGTGGCCCTTTGGGAcggg                                                                                                                                                                  >  6:136944/1‑145              ATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGG‑CCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGC                                                                                                                                                                 <  2:104723/148‑1                GGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGG‑CCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTT                                                                                                                                                              >  2:82123/1‑149                  GGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGG‑CCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGT                                                                                                                                                            >  4:100730/1‑149                    GAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGG‑CCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGT                                                                                                                                                          <  3:186574/149‑1                     AGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGG‑CCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTC                                                                                                                                                         <  4:98742/149‑1                                                                                                              CGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGA                                                                                                              <  8:71895/104‑1                                                                                                              CGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGA                                                                                                              >  7:71895/1‑104                                                                                                                 TCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATAACGCTCTACCCGACCGCGGAAAACCGA                                                                                                >  8:238323/1‑115                                                                                                                                                      CTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACGGCTCCCCCATCAACCTCCACT                                                         >  1:335831/1‑117                                                                                                                                                      CTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACT                                                         <  2:335831/117‑1                                                                                                                                                        GTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACC                       >  1:364840/1‑149                                                                                                                                                               CGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCC                <  4:186574/149‑1                                                                                                                                                               CGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCC                >  5:51229/1‑149                                                                                                                                                                GGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCC               <  2:26844/149‑1                                                                                                                                                                      GTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTG          <  5:126100/148‑1                                                                                                                                                                       TGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGGAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGG         <  3:267108/148‑1                                                                                                                                                                       TGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGG         <  7:283216/148‑1                                                                                                                                                                           GCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCAC    >  3:87913/1‑149                                                                                                                                                                             GATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCGCCCCCCGCCACCTCCACTGACTGCCCCATGTACCCCAAAAAATTCGTCAACCCGTGACCCGCCTGGGCCACGG  >  8:388605/1‑149                                                                                                                                                                                                                                                                                                                                   TCAGTGGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGG‑CCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4893725‑4893553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACGG  >  NC_002947/4893632‑4893778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.