New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4893553 =	54 (0.840)	3 (0.060)	3/200	NT	8.8%	intergenic (+28/‑180)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	4893632 =	20 (0.400)					intergenic (+107/‑101)	pyk/PP_4302	pyruvate kinase/urea transporter

CGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACGG  >  NC_002947/4893485‑4893778                                                                                                                                                     |                                                                                                                                                   cGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGAtt                                                                                                                                                   <  4:378508/149‑1 (MQ=255)           tAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCaaa                                                                                                                                         <  8:167064/149‑1 (MQ=255)             acacGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGc                                                                                                                                       >  4:321133/1‑149 (MQ=255)             acacGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAAAGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGc                                                                                                                                       >  8:72454/1‑149 (MQ=255)              cacGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTACCACAGGGCCACGCTGGCACAAGGGAATGCAGTACCTGTGGGGGCGG‑CCTGGTGTCGCGATTGGAGGGCAAAGcc                                                                                                                                      >  5:136944/1‑149 (MQ=255)                 gCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGccctc                                                                                                                                   >  5:412997/1‑149 (MQ=255)                         tCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAAGCCCCAACCACACGGCCCCCCAGGCCAAAAGGAATTCAATGCCAATGGGGGCCG‑CCATGTGTAGCGCATTGAGGGCAAAACCCACCCCGaaa                                                                                                                            >  4:405535/1‑147 (MQ=255)                            ataCTTTTATCTGTGATTGCCGGGGGCGGTTTACGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGTAATGCAGTCCCTGTGGGTGGGG‑CCTTGTGTCGCGATTGGa                                                                                                                                                <  6:239072/123‑1 (MQ=37)                            agaCTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGTAGTCCCTGTGGGAGCGG‑CCTTGTGACGCGATTGGAGGGCAAAGCCCTCCCTGAATACCg                                                                                                                        <  6:310150/149‑1 (MQ=255)                            agaCTTTGATCTGAGATTGCCGGGGGCGCGTTACGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGTATTCAGTGCCTGTGGGAGCGG‑CCGTGTGTGGCGCTTggt                                                                                                                                                >  5:239072/1‑124 (MQ=37)                               cTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACCCACGCACAAGGGAATTCAGTCCCTGTGGGAGCGG‑CATTGTGTAGCGATTGGACGGCAAATCCCTCCCTGAATACCGca                                                                                                                      >  2:60976/1‑147 (MQ=38)                                              gCCGGGGGCGCGTTGCGCCCCTTGCGCGACACAAGGCCGCTCCCACAGGGCCACGCGGGCACAAGGCAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGa                                                                                                       <  4:367145/148‑1 (MQ=255)                                                             cgcCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCaaa                                                                                        <  5:117085/148‑1 (MQ=255)                                                               ccccTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAagag                                                                                     <  6:412997/149‑1 (MQ=255)                                                                 ccTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGc                                                                                   <  7:72454/149‑1 (MQ=255)                                                                         GACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCt                                                                           <  4:98742‑M1/149‑1 (MQ=255)                                                                          ACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTc                                                                          <  3:186574‑M1/149‑1 (MQ=255)                                                                            ACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTccc                                                                        >  4:100730‑M1/1‑149 (MQ=255)                                                                              AAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTccccc                                                                      >  2:82123‑M1/1‑149 (MQ=255)                                                                                 GCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCAt                                                                    <  2:104723‑M1/148‑1 (MQ=255)                                                                                  cccgTCCCAAAGGGCCACGCTGGCACAAGGGAATTCAGTCCCTGTGGTAGGGG‑CCTTGTGTCGGGTTTGGAGGGCAAAGCCCTGCCTGAATACCGCTCTACCCGACCGCCGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCa                                                                  >  6:136944‑M1/5‑149 (MQ=255)                                                                                    cgctcccacagggactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGa                                                                                                              <  8:71895‑M2/39‑1 (MQ=255)                                                                                    cgctcccacagggactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGa                                                                                                              >  7:71895‑M2/66‑104 (MQ=255)                                                                                      TCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGA‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCt                                                              <  1:138307‑M1/149‑1 (MQ=255)                                                                                       tcccacagggactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATAACGCTCTACCCGACCGCGGAAAACCGa                                                                                                >  8:238323‑M2/63‑115 (MQ=255)                                                                                        CCACCGGGCCACGCGGGCACAAGGCAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGGCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTcc                                                            >  3:232204‑M1/1‑149 (MQ=255)                                                                                        CCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTcc                                                            >  1:104723‑M1/1‑149 (MQ=255)                                                                                         CACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTc                                                             <  1:296746‑M1/148‑1 (MQ=255)                                                                                          ACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTc                                                             >  8:212141‑M1/1‑146 (MQ=255)                                                                                          ACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTc                                                             <  7:212141‑M1/146‑1 (MQ=255)                                                                                           CAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCact                                                         >  2:296746‑M1/1‑149 (MQ=255)                                                                                             GGGCCACGCTGCCACATGGAAATGCCGGCCCTGGGGGCGGGG‑CTTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCactga                                                       >  3:405535‑M1/1‑149 (MQ=255)                                                                                                 cACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCCAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGc                                                   <  3:321133/149‑1 (MQ=255)                                                                                                    gCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCGCACCGCTCCCCCATCAACCTCCACTGACTGcccc                                                <  1:60976/149‑1 (MQ=255)                                                                                                          acaAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTAGTGTCGCGATTGGAGGGCAAAGCCCTCCCAGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCACCCTCCCCTGACGGCCCCATGTac                                          >  8:283216/1‑149 (MQ=39)                                                                                                           caAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTaca                                         >  1:115550/1‑149 (MQ=255)                                                                                                            aaGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGGAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTacac                                        >  4:267108/1‑149 (MQ=255)                                                                                                            aaGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTacac                                        >  8:117874/1‑149 (MQ=255)                                                                                                              gggAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACAcc                                       >  6:195089/1‑148 (MQ=255)                                                                                                                gAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCaa                                     >  5:46814/1‑148 (MQ=255)                                                                                                                      aGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTc                              <  3:98742/149‑1 (MQ=255)                                                                                                                            ctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACGGCTCCCCCATCAACCTCCact                                                         >  1:335831‑M2/26‑117 (MQ=255)                                                                                                                            ctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCact                                                         <  2:335831‑M2/92‑1 (MQ=255)                                                                                                                              gtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAAcc                       >  1:364840‑M2/24‑149 (MQ=255)                                                                                                                                     cggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGccc                >  5:51229‑M2/17‑149 (MQ=255)                                                                                                                                     cggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGccc                <  4:186574‑M2/133‑1 (MQ=255)                                                                                                                                      ggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGcccc               <  2:26844‑M2/134‑1 (MQ=255)                                                                                                                                            gtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTg          <  5:126100‑M2/139‑1 (MQ=255)                                                                                                                                             tgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGGAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTgg         <  3:267108‑M2/140‑1 (MQ=255)                                                                                                                                             tgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTgg         <  7:283216‑M2/140‑1 (MQ=255)                                                                                                                                                 gcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCAc    >  3:87913‑M2/5‑149 (MQ=255)                                                                                                                                                   gaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCGCCCCCCGCCACCTCCACTGACTGCCCCATGTACCCCAAAAAATTCGTCAACCCGTGACCCGCCTGGGCCACgg  >  8:388605‑M2/3‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGG‑CCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACGG  >  NC_002947/4893485‑4893778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.