| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4932061 = | 60 (0.940) | 3 (0.050) | 3/238 | NT | 5.4% | coding (157/741 nt) | fliA | RNA polymerase sigma 28 factor |
| ? | NC_002947 | 4932103 = | 48 (0.800) | coding (115/741 nt) | fliA | RNA polymerase sigma 28 factor | |||||
TGAACGCCAGCGGCTTCAAGATGTACAGCCGGGCGGCGAAGGACGCCCAGTACGAGCTGATCGAACGCTACGCCCCGCTGGTCAAGCGCATCGCCTACCACCTGTTGGCGCGCTTGCCGGCCAACGTGCAGGTCGAGGACCTGATCCAGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4932216‑4932061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcaAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGC‑GTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACC > NC_002947/4932103‑4932247 TGAACGCCAGCGGCTTCAAGATGTACAGCCGGGCGGCGAAGGACGCCCAGTACGAGCTGATCGAACGCTACGCCCCGCTGGTCAAGCGCATCGCCTACCACCTGTTGGCGCGCTTGCCGGCCAACGTGCAGGTCGAGGACCTGATCCAG > 6:371076/1‑149TGAACGCCAGCGGCTTCAAGATGTACAGCCGGGCGGCGAAGGACGCCCAGTACGAGCTGATCGAACGCTACGCCCCGCTGGTCAAGCGCATCGCCTACCACCTGTTGGCGCGCTTGCCGGCCAACGTGCAGGTCGAGGACCTGATCCAG < 8:215854/149‑1TGAACCCCAGCGGCTTCAAGATGTACAGCCGGGCGGCGAAGGACGCCCAGTACGAGCTGATCGAACGCTACGCCCCGCTGGTCAAGCGCATCGCCTACCACCTGTTGGCGCGCTTGCCGGCCAACGTGCAGGTCGAGGACCTGATCCAG > 6:109898/1‑149 ccCCAGCGGCTTCAAGATGTACAGCCGGGCGGCGAAGGACGCCCAGTACGAGCTGATCGAACGCTACGCCCCGCTGGTCAAGCGCATCGCCTACCACCTGTTGGCGCGCTTGCCGGCCAACGTGCAGGTCGAGGACCTGATCCAGGCCG < 5:109898/147‑1 CGAACGCTACGCCCCGCTGGTCAAGCGCATCGCCTACCACCTGTTGGCGCGCTTGCCGGCCAACGTGCAGGTCGAGGACCTGATCCAGGCCGG < 3:408091/93‑1 CGAACGCTACGCCCCGCTGGTCAAGCGCATCGCCTACCACCTGTTGGCGCGCTTGCCGGCCAACGTGCAGGTCGAGGACCTGATCCAGGCCGG > 4:408091/1‑93 TTGCCGGCCAACGTGCAGGTCGAGGACCTGATCCAGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGC‑GTAGCGTTCGATCAGC > 3:230280/1‑102 TTGCCGGCCAACGTGCAGGTCGAGGACCTGATCCAGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGC‑GTAGCGTTCGATCAGC < 4:230280/102‑1 CGGCCAACGTGCAGGTCGAGGACCTGATCCAGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGC‑GTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCG > 2:155198/1‑149 GCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGC‑GTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTG > 1:406069/1‑148 GCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGC‑GTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTG > 3:307607/1‑148 CCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCTGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGC > 1:302275/1‑149 CGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGC‑GTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCAC < 6:303149/149‑1 CGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGC‑GTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGG > 5:132428/1‑142 CGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGC‑GTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGG < 6:132428/142‑1 CAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGC‑GTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACC > 3:227310/1‑147 TGAACGCCAGCGGCTTCAAGATGTACAGCCGGGCGGCGAAGGACGCCCAGTACGAGCTGATCGAACGCTACGCCCCGCTGGTCAAGCGCATCGCCTACCACCTGTTGGCGCGCTTGCCGGCCAACGTGCAGGTCGAGGACCTGATCCAGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4932216‑4932061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcaAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGC‑GTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACC > NC_002947/4932103‑4932247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |