New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4932061 =60 (0.940)3 (0.050) 3/238 NT 5.4% coding (157/741 nt) fliA RNA polymerase sigma 28 factor
?NC_002947 4932103 = 48 (0.800)coding (115/741 nt) fliA RNA polymerase sigma 28 factor

GGGTGTTGCGGTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCT  >  NC_002947/4931914‑4932208
                                                                                                                                                    |                                                                                                                                                   
gggTGTTGCGGTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATg                                                                                                                                                    >  5:164696/1‑149 (MQ=255)
   tgtTGCGGTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCg                                                                                                                                                 <  3:376718/149‑1 (MQ=255)
   ggtgcaacccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTg                                                                                                                                                    >  3:227310‑M1/146‑147 (MQ=255)
    gtgcaacccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCg                                                                                                                                                 <  6:303149‑M1/5‑1 (MQ=255)
     gcaacccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacagccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCgg                                                                                                                                                >  1:302275‑M1/144‑149 (MQ=255)
       gCGGTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCt                                                                                                                                             >  8:302192/1‑149 (MQ=255)
       caacccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCGGc                                                                                                                                               >  3:307607‑M1/142‑148 (MQ=255)
       caacccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCGGc                                                                                                                                               >  1:406069‑M1/142‑148 (MQ=255)
        cGGTGTACCGCACGCGGCGCCCAGTCGCCTCTGCGCACTTCGTCCAGCACGGCCCCGCGAATGCGGATGCCGGCGTAGGGCTCAAACCTGGCGCCCTTGCTGGCGGCGTATTTGCTGGCCACTTCCAGCAGGCCGATCATGCCGGcc                                                                                                                                              <  4:202902/147‑1 (MQ=255)
        cGGTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTg                                                                                                                                            >  5:46832/1‑149 (MQ=255)
         ggTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTgg                                                                                                                                           <  1:47276/149‑1 (MQ=255)
           ccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCg                                                                                                                                                 <  6:132428‑M1/5‑1 (MQ=255)
           ccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCg                                                                                                                                                 >  5:132428‑M1/138‑142 (MQ=255)
            gtACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATc                                                                                                                                        <  7:158483/149‑1 (MQ=255)
               ccGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTTGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAgg                                                                                                                                     >  6:254856/1‑149 (MQ=255)
               ccGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGc                                                                                                                                               >  2:16906/1‑139 (MQ=255)
               ccGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGc                                                                                                                                               <  1:16906/139‑1 (MQ=255)
               ccGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAgg                                                                                                                                     >  8:320612/1‑149 (MQ=255)
               ccGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAg                                                                                                                                      <  6:46832/148‑1 (MQ=255)
               ccGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGAGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAgg                                                                                                                                     >  3:244642/1‑149 (MQ=255)
                cgtaCGCGGCGCCCAGTCGGCTTTGCGCACTTCGTGCAGCATGGCCCCGCGAATGCGGTTGGCGGCGTAGGTCTCAAACCTGGCGCCCTTGCTGGCGTCGCTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAgg                                                                                                                                     <  1:95749/146‑1 (MQ=255)
                cGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAgg                                                                                                                                     >  4:99380/1‑148 (MQ=255)
                cGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGt                                                                                                                                    >  5:332127/1‑149 (MQ=255)
                 gAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTc                                                                                                                                   >  4:196164/1‑149 (MQ=255)
                     gcggcgCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCg                                                                                                                               <  8:108586/149‑1 (MQ=255)
                       ggcgCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGAc                                                                                                                             >  5:186109/1‑149 (MQ=255)
                         cgcCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCt                                                                                                                           <  7:320612/149‑1 (MQ=255)
                            ccAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCa                                                                                                                        <  1:154015/149‑1 (MQ=255)
                                  gCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTg                                                                                                                   <  5:387706/148‑1 (MQ=255)
                                      cgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCg                                                                                                               >  2:155198‑M1/111‑149 (MQ=255)
                                       tGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCg                                                                                                               <  6:186109/147‑1 (MQ=255)
                                          gcACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGc                                                                                                             >  6:304406/1‑146 (MQ=255)
                                          gcACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCaa                                                                                                           <  5:304406/148‑1 (MQ=255)
                                              ttCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAg                                                                                                                                      >  4:48760/1‑117 (MQ=255)
                                              ttCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAg                                                                                                                                      <  3:48760/117‑1 (MQ=255)
                                              ttCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAgcgcg                                                                                                      >  7:376555/1‑149 (MQ=255)
                                                cGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTTGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAgcgcgc                                                                                                     <  5:254856/148‑1 (MQ=255)
                                                 gTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGcc                                                                                                    <  3:381345/148‑1 (MQ=255)
                                                 gTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTCGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGcc                                                                                                    >  5:356419/1‑148 (MQ=255)
                                                  tCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCaa                                                                                                  >  3:73127/1‑149 (MQ=255)
                                                    cAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCaa                                                                                                  >  6:35412/1‑147 (MQ=255)
                                                    cAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACa                                                                                                <  3:99380/149‑1 (MQ=255)
                                                      gCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGc                                                                                                             >  5:425645/1‑134 (MQ=255)
                                                      gCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGc                                                                                                             <  6:425645/134‑1 (MQ=255)
                                                         tGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAggtgg                                                                                           <  6:164696/149‑1 (MQ=255)
                                                              ccGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAggtg                                                                                            >  5:37678/1‑143 (MQ=255)
                                                              ccGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAggtg                                                                                            <  6:37678/143‑1 (MQ=255)
                                                                  gAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATg                                                                                  <  8:204206/149‑1 (MQ=255)
                                                                      gCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCt                                                                              >  5:257984/1‑149 (MQ=255)
                                                                              cGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGc                                                                      >  4:251721/1‑149 (MQ=255)
                                                                                gCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCt                                                                                                                           >  2:399151/1‑94 (MQ=255)
                                                                                 cGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCggg                                                                   <  7:302192/149‑1 (MQ=255)
                                                                                       tctcAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCATGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTa                                                              <  4:244642/148‑1 (MQ=255)
                                                                                         gctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCaa                                                                                                           >  3:230280‑M1/60‑102 (MQ=255)
                                                                                         gctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCaa                                                                                                           <  4:230280‑M1/43‑1 (MQ=255)
                                                                                                     cccTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTc                                               >  8:216669/1‑149 (MQ=255)
                                                                                                              gCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTgg                                        <  6:356419/147‑1 (MQ=255)
                                                                                                                gtcgtATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGt                                    >  5:63296/1‑149 (MQ=255)
                                                                                                                     tATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCtt                                >  5:63332/1‑149 (MQ=255)
                                                                                                                     tATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCtt                                >  7:145722/1‑149 (MQ=255)
                                                                                                                       tttGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTcg                              >  2:45962/1‑149 (MQ=255)
                                                                                                                       tttGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTcg                              >  1:36845/1‑149 (MQ=255)
                                                                                                                       tttGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTc                               <  8:145722/148‑1 (MQ=255)
                                                                                                                         tgttgGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTcgc                             <  6:257984/148‑1 (MQ=255)
                                                                                                                             ggCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGAGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCgccgcc                         <  3:196164/148‑1 (MQ=255)
                                                                                                                                cACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGc                                                                 <  3:260309/105‑1 (MQ=255)
                                                                                                                                cACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGc                                                                 >  4:260309/1‑105 (MQ=255)
                                                                                                                                   ttCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTgg                                        <  5:242096/127‑1 (MQ=255)
                                                                                                                                   ttCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTgg                                        >  6:242096/1‑127 (MQ=255)
                                                                                                                                     ccAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGt                  <  6:332127/147‑1 (MQ=255)
                                                                                                                                      cagcagGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTAc                <  3:251721/148‑1 (MQ=255)
                                                                                                                                         cagGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCt            >  5:303149/1‑149 (MQ=255)
                                                                                                                                                 tCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCg    <  4:73127/149‑1 (MQ=255)
                                                                                                                                                   aTGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCt  >  5:371076/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GGGTGTTGCGGTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCT  >  NC_002947/4931914‑4932208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.