New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4932061 =	60 (0.940)	3 (0.050)	3/238	NT	5.4%	coding (157/741 nt)	fliA	RNA polymerase sigma 28 factor
	?	NC_002947	4932103 =	48 (0.800)					coding (115/741 nt)	fliA	RNA polymerase sigma 28 factor

GGGTGTTGCGGTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCT  >  NC_002947/4931914‑4932208                                                                                                                                                     |                                                                                                                                                    gggTGTTGCGGTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATg                                                                                                                                                    >  5:164696/1‑149 (MQ=255)    tgtTGCGGTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCg                                                                                                                                                 <  3:376718/149‑1 (MQ=255)    ggtgcaacccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTg                                                                                                                                                    >  3:227310‑M1/146‑147 (MQ=255)     gtgcaacccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCg                                                                                                                                                 <  6:303149‑M1/5‑1 (MQ=255)      gcaacccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacagccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCgg                                                                                                                                                >  1:302275‑M1/144‑149 (MQ=255)        gCGGTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCt                                                                                                                                             >  8:302192/1‑149 (MQ=255)        caacccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCGGc                                                                                                                                               >  3:307607‑M1/142‑148 (MQ=255)        caacccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCGGc                                                                                                                                               >  1:406069‑M1/142‑148 (MQ=255)         cGGTGTACCGCACGCGGCGCCCAGTCGCCTCTGCGCACTTCGTCCAGCACGGCCCCGCGAATGCGGATGCCGGCGTAGGGCTCAAACCTGGCGCCCTTGCTGGCGGCG‑TATTTGCTGGCCACTTCCAGCAGGCCGATCATGCCGGcc                                                                                                                                              <  4:202902/147‑1 (MQ=255)         cGGTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTg                                                                                                                                            >  5:46832/1‑149 (MQ=255)          ggTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTgg                                                                                                                                           <  1:47276/149‑1 (MQ=255)            ccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCg                                                                                                                                                 <  6:132428‑M1/5‑1 (MQ=255)            ccaccagcgcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCg                                                                                                                                                 >  5:132428‑M1/138‑142 (MQ=255)             gtACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATc                                                                                                                                        <  7:158483/149‑1 (MQ=255)                ccGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTTGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAgg                                                                                                                                     >  6:254856/1‑149 (MQ=255)                ccGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGc                                                                                                                                               >  2:16906/1‑139 (MQ=255)                ccGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGc                                                                                                                                               <  1:16906/139‑1 (MQ=255)                ccGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAgg                                                                                                                                     >  8:320612/1‑149 (MQ=255)                ccGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAg                                                                                                                                      <  6:46832/148‑1 (MQ=255)                ccGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGAGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAgg                                                                                                                                     >  3:244642/1‑149 (MQ=255)                 cgtaCGCGGCGCCCAGTCGGCTTTGCGCACTTCGTGCAGCATGGCCCCGCGAATGCGGTTGGCGGCGTAGGTCTCAAACCTGGCGCCCTTGCTGGCGTCGCTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAgg                                                                                                                                     <  1:95749/146‑1 (MQ=255)                 cGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAgg                                                                                                                                     >  4:99380/1‑148 (MQ=255)                 cGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGt                                                                                                                                    >  5:332127/1‑149 (MQ=255)                  gAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTc                                                                                                                                   >  4:196164/1‑149 (MQ=255)                      gcggcgCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCg                                                                                                                               <  8:108586/149‑1 (MQ=255)                        ggcgCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGAc                                                                                                                             >  5:186109/1‑149 (MQ=255)                          cgcCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCt                                                                                                                           <  7:320612/149‑1 (MQ=255)                             ccAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCa                                                                                                                        <  1:154015/149‑1 (MQ=255)                                   gCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTg                                                                                                                   <  5:387706/148‑1 (MQ=255)                                       cgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCg                                                                                                               >  2:155198‑M1/111‑149 (MQ=255)                                        tGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCg                                                                                                               <  6:186109/147‑1 (MQ=255)                                           gcACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGc                                                                                                             >  6:304406/1‑146 (MQ=255)                                           gcACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCaa                                                                                                           <  5:304406/148‑1 (MQ=255)                                               ttCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAg                                                                                                                                      >  4:48760/1‑117 (MQ=255)                                               ttCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAg                                                                                                                                      <  3:48760/117‑1 (MQ=255)                                               ttCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAgcgcg                                                                                                      >  7:376555/1‑149 (MQ=255)                                                 cGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTTGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAgcgcgc                                                                                                     <  5:254856/148‑1 (MQ=255)                                                  gTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGcc                                                                                                    <  3:381345/148‑1 (MQ=255)                                                  gTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTCGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGcc                                                                                                    >  5:356419/1‑148 (MQ=255)                                                   tCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCaa                                                                                                  >  3:73127/1‑149 (MQ=255)                                                     cAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCaa                                                                                                  >  6:35412/1‑147 (MQ=255)                                                     cAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACa                                                                                                <  3:99380/149‑1 (MQ=255)                                                       gCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGc                                                                                                             >  5:425645/1‑134 (MQ=255)                                                       gCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGc                                                                                                             <  6:425645/134‑1 (MQ=255)                                                          tGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAggtgg                                                                                           <  6:164696/149‑1 (MQ=255)                                                               ccGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAggtg                                                                                            >  5:37678/1‑143 (MQ=255)                                                               ccGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAggtg                                                                                            <  6:37678/143‑1 (MQ=255)                                                                   gAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATg                                                                                  <  8:204206/149‑1 (MQ=255)                                                                       gCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCt                                                                              >  5:257984/1‑149 (MQ=255)                                                                               cGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGc                                                                      >  4:251721/1‑149 (MQ=255)                                                                                 gCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCt                                                                                                                           >  2:399151/1‑94 (MQ=255)                                                                                  cGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCggg                                                                   <  7:302192/149‑1 (MQ=255)                                                                                        tctcAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCATGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTa                                                              <  4:244642/148‑1 (MQ=255)                                                                                          gctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCaa                                                                                                           >  3:230280‑M1/60‑102 (MQ=255)                                                                                          gctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgctTGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCaa                                                                                                           <  4:230280‑M1/43‑1 (MQ=255)                                                                                                      cccTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTc                                               >  8:216669/1‑149 (MQ=255)                                                                                                               gCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTgg                                        <  6:356419/147‑1 (MQ=255)                                                                                                                 gtcg‑tATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGt                                    >  5:63296/1‑149 (MQ=255)                                                                                                                      tATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCtt                                >  5:63332/1‑149 (MQ=255)                                                                                                                      tATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCtt                                >  7:145722/1‑149 (MQ=255)                                                                                                                        tttGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTcg                              >  2:45962/1‑149 (MQ=255)                                                                                                                        tttGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTcg                              >  1:36845/1‑149 (MQ=255)                                                                                                                        tttGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTc                               <  8:145722/148‑1 (MQ=255)                                                                                                                          tgttgGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTcgc                             <  6:257984/148‑1 (MQ=255)                                                                                                                              ggCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGAGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCgccgcc                         <  3:196164/148‑1 (MQ=255)                                                                                                                                 cACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGc                                                                 <  3:260309/105‑1 (MQ=255)                                                                                                                                 cACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGc                                                                 >  4:260309/1‑105 (MQ=255)                                                                                                                                    ttCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTgg                                        <  5:242096/127‑1 (MQ=255)                                                                                                                                    ttCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTgg                                        >  6:242096/1‑127 (MQ=255)                                                                                                                                      ccAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGt                  <  6:332127/147‑1 (MQ=255)                                                                                                                                       cagcagGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTAc                <  3:251721/148‑1 (MQ=255)                                                                                                                                          cagGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCt            >  5:303149/1‑149 (MQ=255)                                                                                                                                                  tCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCg    <  4:73127/149‑1 (MQ=255)                                                                                                                                                    aTGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCt  >  5:371076/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GGGTGTTGCGGTGTACCGAACGCGGCGCCCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCG‑TATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCT  >  NC_002947/4931914‑4932208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.