| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4948510 = | 53 (0.830) | 3 (0.050) | 3/240 | NT | 5.9% | coding (338/435 nt) | fliO | flagellar protein FliO |
| ? | NC_002947 | 4948556 = | 46 (0.760) | coding (292/435 nt) | fliO | flagellar protein FliO | |||||
CGAGATTGTCGGCAGCCGTGCCATCGGCCCGCGTGACCGCCTGCTGCTGGTGCAGGTGGGCAAGGAGCAGATCCTGATCGGCCATACCCCCGGCACCATCGAGGCCCTGCACGTACTGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4948632‑4948510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgaTCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGG > NC_002947/4948556‑4948701 CGAGATTGTCGGCAGCCGTGCCATCGGCCCGCGTGACCGCCTGCTGCTGGTGCAGGTGGGCAAGGAGCAGATCCTGATCGGCCATACCCCCGGCACCATCGAGGCCCTGCACGTACTGG < 5:254863/119‑1CGAGATTGTCGGCAGCCGTGCCATCGGCCCGCGTGACCGCCTGCTGCTGGTGCAGGTGGGCAAGGAGCAGATCCTGATCGGCCATACCCCCGGCACCATCGAGGCCCTGCACGTACTGG > 6:254863/1‑119 GATTGTCGGCAGCCGTGCCATCGGCCCGCGTGACCGCCTGCTGCTGGTGCAGGTGGGCAAGGAGCAGATCCTGATCGGCCATACCCCCGGCACCATCGAGGCCCTGCACGTACTGG < 3:23582/116‑1 GATTGTCGGCAGCCGTGCCATCGGCCCGCGTGACCGCCTGCTGCTGGTGCAGGTGGGCAAGGAGCAGATCCTGATCGGCCATACCCCCGGCACCATCGAGGCCCTGCACGTACTGG > 4:23582/1‑116 ATCGGCCATACCCCCGGCACCATCGAGGCCCTGCACGTACTGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCC > 1:296236/1‑139 ATCGGCCATACCCCCGGCACCATCGAGGCCCTGCACGTACTGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCC < 2:296236/139‑1 CATACCCCCGGCACCATCGAGGCCCTGCACGTACTGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCT > 1:195356/1‑149 GGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGC‑GTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATC < 5:222977/148‑1 GCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATC < 6:1043/148‑1 CCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAG < 5:390422/149‑1 CCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAG < 6:185213/149‑1 CGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGG < 6:88268/149‑1 ATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGA < 7:319254/139‑1 ATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGA > 8:319254/1‑139 CGAGATTGTCGGCAGCCGTGCCATCGGCCCGCGTGACCGCCTGCTGCTGGTGCAGGTGGGCAAGGAGCAGATCCTGATCGGCCATACCCCCGGCACCATCGAGGCCCTGCACGTACTGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4948632‑4948510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgaTCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGG > NC_002947/4948556‑4948701 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |