New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4948510 =	53 (0.830)	3 (0.050)	3/240	NT	5.9%	coding (338/435 nt)	fliO	flagellar protein FliO
	?	NC_002947	4948556 =	46 (0.760)					coding (292/435 nt)	fliO	flagellar protein FliO

ACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGG  >  NC_002947/4948415‑4948701                                                                                                                                              |                                                                                                                                                  aCTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATc                                                                                                                                            >  5:185213/1‑149 (MQ=255)    gggtgggcaggtgatcgagattgtcggcagccgtgccatcggcccgcgtgaccgcctgctgctggtgcaggtgggcaaggagcagatcctgaTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGAt                                                                                                                                                   >  1:296236‑M1/93‑139 (MQ=255)    gggtgggcaggtgatcgagattgtcggcagccgtgccatcggcccgcgtgaccgcctgctgctggtgcaggtgggcaaggagcagatcctgaTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGAt                                                                                                                                                   <  2:296236‑M1/47‑1 (MQ=255)                    cTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCa                                                                                                                         >  6:350464/1‑149 (MQ=255)                         ccATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACcag                                                                                                                     >  6:301566/1‑148 (MQ=255)                          cATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACcag                                                                                                                     >  3:234446/1‑147 (MQ=255)                           aTCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGCTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCAACCTGCACcagcag                                                                                                                  >  3:384226/1‑149 (MQ=255)                            tCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACcagcag                                                                                                                  >  1:406542/1‑148 (MQ=255)                                   cATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCg                                                                                                            <  3:353936/147‑1 (MQ=255)                                   cATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGCGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCg                                                                                                            >  4:353936/1‑147 (MQ=255)                                     tCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCAc                                                                                                                              <  5:148413/127‑1 (MQ=255)                                     tCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCAc                                                                                                                              >  6:148413/1‑127 (MQ=255)                                        gCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCAcgc                                                                                                     >  5:88268/1‑149 (MQ=255)                                          cGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGc                                                                                                                          <  4:238103/126‑1 (MQ=255)                                          cGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGc                                                                                                                          >  3:238103/1‑126 (MQ=255)                                             tGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGc                                                                                                                                  >  4:2856/1‑115 (MQ=255)                                             tGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGc                                                                                                                                  <  3:2856/115‑1 (MQ=255)                                                  aaaCTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATgg                                                                                           <  4:234446/149‑1 (MQ=255)                                                            gTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGcc                                                                                 >  8:21561/1‑149 (MQ=255)                                                                 cTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACa                                                                             >  6:223024/1‑148 (MQ=255)                                                                    aCGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAAtct                                                                         <  5:350464/149‑1 (MQ=255)                                                                     cGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAAtctc                                                                        <  7:21561/149‑1 (MQ=255)                                                                     cGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAAtcac                                                                        <  5:223024/149‑3 (MQ=255)                                                                      gggCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCa                                                                                                                                                 <  2:317207/75‑1 (MQ=255)                                                                      gggCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCa                                                                                                                                                 >  1:317207/1‑75 (MQ=255)                                                                        gcgcTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGAt                                                                     <  2:406542/149‑1 (MQ=255)                                                                          gcTTGCCGGCACTTCCACGGGTTCGGCCAGTACTTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCa                                                                   >  7:121270/1‑149 (MQ=255)                                                                          gcTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCgg                                                                                                   >  3:357832/1‑117 (MQ=255)                                                                          gcTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCgg                                                                                                   <  4:357832/117‑1 (MQ=255)                                                                            ttGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCAcc                                                                 >  3:377015/1‑149 (MQ=255)                                                                              gCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTg                                                               >  3:16868/1‑149 (MQ=255)                                                                              gCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTg                                                               >  2:333124/1‑149 (MQ=255)                                                                               ccGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCCCGGCTGCCGACAATCTCGATCACCTGc                                                              >  2:156713/1‑149 (MQ=255)                                                                               ccGGCACTTCCACGGGTGCGGCCAGTACGTGCTGGGCGTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGc                                                              <  1:133334/149‑1 (MQ=255)                                                                                     cTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACAGCTGCCGACAATCTCGATCACCTGCCCAccc                                                        <  3:273063/149‑1 (MQ=255)                                                                                        ccACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGa                                                                               >  8:322692/1‑123 (MQ=255)                                                                                        ccACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGGCACGCGGGCCGATGGCACGGCTGCCGa                                                                               <  7:322692/123‑1 (MQ=255)                                                                                         cACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTTCACACCTGCACCCGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCa                                                    >  5:1043/1‑149 (MQ=255)                                                                                         cACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCa                                                    >  2:352975/1‑149 (MQ=255)                                                                                         cACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCa                                                    >  6:182408/1‑149 (MQ=255)                                                                                            gggTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTg                                                 <  4:377015/149‑1 (MQ=255)                                                                                               atcggccatacccccggcaccatcgaggccctgcacgtactggccgaTCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCAccc                                                        >  1:296236‑M2/48‑139 (MQ=255)                                                                                               atcggccatacccccggcaccatcgaggccctgcacgtactggccgaTCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCAccc                                                        <  2:296236‑M2/92‑1 (MQ=255)                                                                                                    CCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAAtc                                                                          <  3:23582‑M1/116‑1 (MQ=255)                                                                                                    CCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAAtc                                                                          >  4:23582‑M1/1‑116 (MQ=255)                                                                                                    CCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCg                                                                       <  5:254863‑M1/119‑1 (MQ=255)                                                                                                    CCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCg                                                                       >  6:254863‑M1/1‑119 (MQ=255)                                                                                                     catacccccggcaccatcgaggccctgcacgtactggccgaTCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGctct                                        >  1:195356‑M2/42‑149 (MQ=255)                                                                                                       gTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGC‑GTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTg                                       >  6:222977/1‑147 (MQ=255)                                                                                                           gTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGgc                                  >  6:260004/1‑149 (MQ=255)                                                                                                             gCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGAt                                                                                             <  6:380353/88‑1 (MQ=255)                                                                                                             gCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGAt                                                                                             >  5:380353/1‑88 (MQ=255)                                                                                                              cAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCTGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGcgcc                               <  8:121270/149‑1 (MQ=255)                                                                                                              cAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGgcgc                                <  4:16868/148‑1 (MQ=255)                                                                                                                 ggCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCgca                            >  8:248223/1‑149 (MQ=255)                                                                                                                   ccTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCgcag                           >  5:112958/1‑148 (MQ=255)                                                                                                                           gTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAgccaggc                  >  6:390422/1‑149 (MQ=255)                                                                                                                                        ggccgaTCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGC‑GTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATc     <  5:222977‑M2/142‑1 (MQ=255)                                                                                                                                         gccgaTCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATc     <  6:1043‑M2/143‑1 (MQ=255)                                                                                                                                          ccgaTCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAg   <  5:390422‑M2/145‑1 (MQ=255)                                                                                                                                          ccgaTCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAg   <  6:185213‑M2/145‑1 (MQ=255)                                                                                                                                           cgaTCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAgg  <  6:88268‑M2/146‑1 (MQ=255)                                                                                                                                             aTCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCagaaaga          <  7:319254‑M2/138‑1 (MQ=255)                                                                                                                                             aTCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCagaaaga          >  8:319254‑M2/2‑139 (MQ=255)                                                                                                                                              tCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCagaaagaa         >  1:373572/1‑139 (MQ=255)                                                                                                                                              tCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCagaaagaa         <  2:373572/139‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                  ACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTGCGGTGCTCTGCAGGCGCCGCAGCAGCCAGGCCAGAAAGAAGATCAGG  >  NC_002947/4948415‑4948701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.