New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4948510 =53 (0.830)3 (0.050) 3/240 NT 5.9% coding (338/435 nt) fliO flagellar protein FliO
?NC_002947 4948556 = 46 (0.760)coding (292/435 nt) fliO flagellar protein FliO

GCAGCCAGCAGCAGCGCCAGAGTCAACAACGTACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTG  >  NC_002947/4948364‑4948654
                                                                                                                                                  |                                                                                                                                                
cctgatcttctttctggcctggctgctgcggcgcctgcagagcaccgcagtgaagggtgggcaggtgatcgagattgtcggcagccgtgccatcggcccgcgtgaccgcctgctgctggtgcaggtgggcaaggagcagatcctgaTCg                                                                                                                                                <  6:88268‑M1/3‑1 (MQ=255)
 ctgatcttctttctggcctggctgctgcggcgcctgcagagcaccgcagtgaagggtgggcaggtgatcgagattgtcggcagccgtgccatcggcccgcgtgaccgcctgctgctggtgcaggtgggcaaggagcagatcctgaTCgg                                                                                                                                               <  6:185213‑M1/4‑1 (MQ=255)
 ctgatcttctttctggcctggctgctgcggcgcctgcagagcaccgcagtgaagggtgggcaggtgatcgagattgtcggcagccgtgccatcggcccgcgtgaccgcctgctgctggtgcaggtgggcaaggagcagatcctgaTCgg                                                                                                                                               <  5:390422‑M1/4‑1 (MQ=255)
 cagccagcAGCAGCGCCAGAGTCAACAACGTACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCgg                                                                                                                                               >  7:39091/1‑149 (MQ=255)
   gatcttctttctggcctggctgctgcggcgcctgcagagcaccgcagtgaagggtgggcaggtgatcgagattgtcggcagccgtgccatcggcccgcgtgaccgcctgctgctggtgcaggtgggcaaggagcagatcctgaTCGGc                                                                                                                                              <  6:1043‑M1/5‑1 (MQ=255)
    gatcttctttctggcctggctgctgcggcgcctgcagagcaccgcagtgaagggtgggcaggtgatcgagattgtcggcagccgtgccatcggcccgcgtgacgcctgctgctggtgcaggtgggcaaggagcagatcctgaTCGGcc                                                                                                                                             <  5:222977‑M1/6‑1 (MQ=255)
        tctttctggcctggctgctgcggcgcctgcagagcaccgcagtgaagggtgggcaggtgatcgagattgtcggcagccgtgccatcggcccgcgtgaccgcctgctgctggtgcaggtgggcaaggagcagatcctgat                                                                                                                                                  >  8:319254‑M1/139‑139 (MQ=255)
        tctttctggcctggctgctgcggcgcctgcagagcaccgcagtgaagggtgggcaggtgatcgagattgtcggcagccgtgccatcggcccgcgtgaccgcctgctgctggtgcaggtgggcaaggagcagatcctgat                                                                                                                                                  <  7:319254‑M1/1‑1 (MQ=255)
          gcagcGCCAGAGTCAACAACGTACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGt                                                                                                                                      <  2:390612/149‑1 (MQ=255)
                ccAGAGTCAACAACGTACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAggg                                                                                                                                >  4:273063/1‑149 (MQ=255)
                 cAGAGTCAACAACGTACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGc                                                                                                                               <  3:229943/149‑1 (MQ=255)
                      tCAACAACGTACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGa                                                                                                                          <  8:39091/149‑1 (MQ=255)
                         acaacGTACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATg                                                                                                                        >  4:286611/1‑148 (MQ=255)
                         acaacGTACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATg                                                                                                                        <  3:286611/148‑1 (MQ=255)
                           aacGTACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTg                                                                                                                                     >  4:48133/1‑133 (MQ=255)
                           aacGTACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTg                                                                                                                                     <  3:48133/133‑1 (MQ=255)
                             cGTACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTgtc                                                                                                                   <  8:283770/149‑3 (MQ=255)
                               tACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCgg                                                                                                                 <  6:353197/149‑1 (MQ=255)
                                    aGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAg                                                                                                                                  >  1:109128/1‑127 (MQ=255)
                                    aGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAg                                                                                                                                  <  2:109128/127‑1 (MQ=255)
                                      agagcaccgcagtgaagggtgggcaggtgatcgagattgtcggcagccgtgccatcggcccgcgtgaccgcctgctgctggtgcaggtgggcaaggagcagatcctgaTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATg                                                                                                          >  1:195356‑M1/109‑149 (MQ=255)
                                       gcgcCGCTCATCACTTGTTGACCTTAGGGTCCTTGCCCATCAGCTCCATCACCCGCTCGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTCCAGGGCATCGATGCTGCCGGGGGTATgg                                                                                                         >  2:133334/1‑149 (MQ=255)
                                                   aCTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATc                                                                                             >  5:185213/1‑149 (MQ=255)
                                                      gggtgggcaggtgatcgagattgtcggcagccgtgccatcggcccgcgtgaccgcctgctgctggtgcaggtgggcaaggagcagatcctgaTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGAt                                                                                                    <  2:296236‑M1/47‑1 (MQ=255)
                                                      gggtgggcaggtgatcgagattgtcggcagccgtgccatcggcccgcgtgaccgcctgctgctggtgcaggtgggcaaggagcagatcctgaTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGAt                                                                                                    >  1:296236‑M1/93‑139 (MQ=255)
                                                                aGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTAc                                                                                                                                        <  3:400106/93‑1 (MQ=255)
                                                                aGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTAc                                                                                                                                        >  4:400106/1‑93 (MQ=255)
                                                                      cTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCa                                                                          >  6:350464/1‑149 (MQ=255)
                                                                           ccATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACcag                                                                      >  6:301566/1‑148 (MQ=255)
                                                                            cATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACcag                                                                      >  3:234446/1‑147 (MQ=255)
                                                                             aTCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGCTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCAACCTGCACcagcag                                                                   >  3:384226/1‑149 (MQ=255)
                                                                              tCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACcagcag                                                                   >  1:406542/1‑148 (MQ=255)
                                                                                     cATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCg                                                             <  3:353936/147‑1 (MQ=255)
                                                                                     cATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGCGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCg                                                             >  4:353936/1‑147 (MQ=255)
                                                                                       tCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCAc                                                                               <  5:148413/127‑1 (MQ=255)
                                                                                       tCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCAc                                                                               >  6:148413/1‑127 (MQ=255)
                                                                                          gCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCAcgc                                                      >  5:88268/1‑149 (MQ=255)
                                                                                            cGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGc                                                                           <  4:238103/126‑1 (MQ=255)
                                                                                            cGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGc                                                                           >  3:238103/1‑126 (MQ=255)
                                                                                               tGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGc                                                                                   >  4:2856/1‑115 (MQ=255)
                                                                                               tGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGc                                                                                   <  3:2856/115‑1 (MQ=255)
                                                                                                    aaaCTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATgg                                            <  4:234446/149‑1 (MQ=255)
                                                                                                              gTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGcc                                  >  8:21561/1‑149 (MQ=255)
                                                                                                                   cTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACa                              >  6:223024/1‑148 (MQ=255)
                                                                                                                      aCGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAAtct                          <  5:350464/149‑1 (MQ=255)
                                                                                                                       cGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAAtctc                         <  7:21561/149‑1 (MQ=255)
                                                                                                                       cGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAAtcac                         <  5:223024/149‑3 (MQ=255)
                                                                                                                        gggCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCa                                                                                                  <  2:317207/75‑1 (MQ=255)
                                                                                                                        gggCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCa                                                                                                  >  1:317207/1‑75 (MQ=255)
                                                                                                                          gcgcTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGAt                      <  2:406542/149‑1 (MQ=255)
                                                                                                                            gcTTGCCGGCACTTCCACGGGTTCGGCCAGTACTTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCa                    >  7:121270/1‑149 (MQ=255)
                                                                                                                            gcTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCgg                                                    <  4:357832/117‑1 (MQ=255)
                                                                                                                            gcTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCgg                                                    >  3:357832/1‑117 (MQ=255)
                                                                                                                              ttGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCAcc                  >  3:377015/1‑149 (MQ=255)
                                                                                                                                gCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTg                >  3:16868/1‑149 (MQ=255)
                                                                                                                                gCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTg                >  2:333124/1‑149 (MQ=255)
                                                                                                                                 ccGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCCCGGCTGCCGACAATCTCGATCACCTGc               >  2:156713/1‑149 (MQ=255)
                                                                                                                                 ccGGCACTTCCACGGGTGCGGCCAGTACGTGCTGGGCGTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGc               <  1:133334/149‑1 (MQ=255)
                                                                                                                                       cTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACAGCTGCCGACAATCTCGATCACCTGCCCAccc         <  3:273063/149‑1 (MQ=255)
                                                                                                                                          ccACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGa                                >  8:322692/1‑123 (MQ=255)
                                                                                                                                          ccACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGGCACGCGGGCCGATGGCACGGCTGCCGa                                <  7:322692/123‑1 (MQ=255)
                                                                                                                                           cACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTTCACACCTGCACCCGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCa     >  5:1043/1‑149 (MQ=255)
                                                                                                                                           cACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCa     >  6:182408/1‑149 (MQ=255)
                                                                                                                                           cACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCa     >  2:352975/1‑149 (MQ=255)
                                                                                                                                              gggTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTg  <  4:377015/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
GCAGCCAGCAGCAGCGCCAGAGTCAACAACGTACGCAGCGCGCCGCTCATCACTTGTTGTCCTTAGGGTCCTTGCCCATCAGCTCCATCAGCCGCTGGGCAAACTCCGGCGTCGCCTGACGGGCGCTTGCCGGCACTTCCACGGGTTCGGCCAGTACGTGCAGGGCCTCGATGGTGCCGGGGGTATGGCCGATCAGGATCTGCTCCTTGCCCACCTGCACCAGCAGCAGGCGGTCACGCGGGCCGATGGCACGGCTGCCGACAATCTCGATCACCTGCCCACCCTTCACTG  >  NC_002947/4948364‑4948654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.