New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4958360 =	54 (0.840)	3 (0.050)	3/240	NT	5.4%	coding (340/1020 nt)	fliG	flagellar motor switch protein
	?	NC_002947	4958434 =	55 (0.910)					coding (266/1020 nt)	fliG	flagellar motor switch protein

GATGAGCGAGTTCGTCGACATCGTCGGCGACCAGACCAGCCTGGGCGTCGGTTCTGATGCGTACATCCGCAAGATGCTCAACCAGGCCCTGGGCGAGGACAAGGCCAACGGCCTGGTCGACCGCATCCTGCTCGGCGGCAATACCAGCGGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4958514‑4958360 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctggTTGAGCATCTTGCGGATGTACGCATCAGAACCGACGCCCAGGCTGGTCTGGTCGCCGACGATGTCGACGAACTCGCTCATCACCTGTTCGACCTGGTCACGGTGCACATTGCCCATCTGCGCCATGGCCACACCCACCCGCTGCAC  >  NC_002947/4958434‑4958579                                                                                                                                                                                                                                                                                                               GATGAGCGAGTTCGTCGACATCGTCGGCGACCAGACCAGCCTGGGCGTCGGTTCTGATGCGTACATCCGCAAGATGCTCAACCAGGCCCTGGGCGAGGACAAGGCCCACGGCCTGGTCGACCGCAACCTGCTCCGCGGCAATACAAGCG                                                                                                                                                          >  2:369561/1‑149    GAGCGAGTTCGTCGACATCGTCGGCGACCAGACCAGCCTGGGCGTCGGTTCTGATGCGTACATCCGCAAGATGCTCAACCAGGCCCTGGGCGAGGACAAGGCCAACGGCCTGGTCGACCACATCCTGCTCGGCGGCAATACCAGCGGCC                                                                                                                                                       >  3:194759/1‑149                                                                                AACCAGGCCCTGGGCGAGGACAAGGCCAACGGCCTGGTCGACCGCATCCTGCTCGGCGGCAATACCAGCGGCCTGGTTGAGCATCTTGCGGATGTACGCATCAGAACCGACGCCCAGGCTGGTCTGGTCGCCGACGATGTCGACGAACT                                                                           >  7:314672/1‑149                                                                                  CCAGGCCCTGGGCGAGGACAAGGCCAACGGCCTGGTCGACCGCATCCTGCTCGGCGGCAATACCAGCGGCCTGGTTGAGCATCTTGCGGATGTACGCATCAGAACCGACGCCCAGGCTGGTCTGGTCGCCGACGAT                                                                                      <  7:388204/136‑1                                                                                  CCAGGCCCTGGGCGAGGACAAGGCCAACGGCCTGGTCGACCGCATCCTGCTCGGCGGCAATACCAGCGGCCTGGTTGAGCATCTTGCGGATGTACGCATCAGAACCGACGCCCAGGCTGGTCTGGTCGCCGACGAT                                                                                      >  8:388204/1‑136                                                                                                                                                      GCCTGGTTGAGCATCTTGCGGATGTACGCATCAGAACCGACGCCCAGGCTGGTCTGGTCGCCGACGATGTCGACGAACTCGCTCATCACCTGTTCGACCTGGTCACGGTGCACATTGCCCATCTGCGCCATGGCCACACCCACCCGCTG     <  7:116189/149‑1                                                                                                                                                        CTGGTTGAGCATCTTGCGGATGTACGCATCAGAACCGACGCCCAGGCTGGTCTGGTCGCCGACGATGTCGACGAACTCGCTCATCACCTGTTCGACCTGGTCACGGTGCACATTGACCATCTGCGCCATGGCCACACACACCCGCTGCA   >  5:341310/1‑149                                                                                                                                                        CTGGTTGAGCATCTTGCGGATGTACGCATCAGAACCGACGCCCAGGCTGGTCTGGTCGCCGACGATGTCGACGAACTCGCTCATCACCTGTTCGACCTGGTCACG                                               >  5:164494/1‑105                                                                                                                                                        CTGGTTGAGCATCTTGCGGATGTACGCATCAGAACCGACGCCCAGGCTGGTCTGGTCGCCGACGATGTCGACGAACTCGCTCATCACCTGTTCGACCTGGTCACG                                               <  6:164494/105‑1                                                                                                                                                           GTTGAGCATCTTGCGGATGTACGCATCAGAACCGACGCCCAGGCTGGTCTGGTCGCCGACGATGTCGACGAACTCGCTCATCACCTGTTCGACCTGGTCACGGTGCACATTGCCCATCTGCGCCATGGCCACACCCACCCGCTGCAC  <  5:345858/147‑1                                                                                                                                                                                                                                                                                                               GATGAGCGAGTTCGTCGACATCGTCGGCGACCAGACCAGCCTGGGCGTCGGTTCTGATGCGTACATCCGCAAGATGCTCAACCAGGCCCTGGGCGAGGACAAGGCCAACGGCCTGGTCGACCGCATCCTGCTCGGCGGCAATACCAGCGGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4958514‑4958360 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctggTTGAGCATCTTGCGGATGTACGCATCAGAACCGACGCCCAGGCTGGTCTGGTCGCCGACGATGTCGACGAACTCGCTCATCACCTGTTCGACCTGGTCACGGTGCACATTGCCCATCTGCGCCATGGCCACACCCACCCGCTGCAC  >  NC_002947/4958434‑4958579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.