| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5066904 | 48 (0.750) | 3 (0.050) | 3/240 | NT | 6.1% | coding (633/906 nt) | PP_4464 | LysR family transcriptional regulator |
| ? | NC_002947 | = 5066928 | 47 (0.780) | coding (609/906 nt) | PP_4464 | LysR family transcriptional regulator | |||||
AATTATCCAGACCGAATGACTGCAGTTGGCTATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5066753‑5066904‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggccAATGGTCGATAAATGGTTTCATGAGGCCGGAGTGACGCCTAATTACACTATTGAGGTTGGCGGAGCTGGTACGGCAATCGAGTTGGTTCGTGGTGGCCTTGGAGTTACGTTCGTGAATAGTTTTAGCTTGATGGAACGGGCTGATA < NC_002947/5066928‑5066783 AATTATCCAGACCGAATGACTGCAGTTGGCTATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCG > 2:122167/1‑149 TTATCCAGACCGAATGACTGCAGTTGGCTATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGC < 2:241057/149‑1 AGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCAATGGTCGATAAATGGTTTCATGAGGCCGGA < 5:3316/149‑1 TCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCAATGGTCGATAAATGGTTTCATGAGGCCGGAGT < 1:88270/125‑1 TCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCAATGGTCGATAAATGGTTTCATGAGGCCGGAGT > 2:88270/1‑125 GCCAATGGTCGATAAATGGTTTCATGAGGCCTGAGTTACGACTAATTACACTATTGAGGTTGGCTGAGCTGGTACGGCAATCTAGTTGGTTCGTGGTGGCCTTGTAGTTACGTTCGTGAATAGTTTTAGCTTGATGGAACGGGCTGATA < 5:118506/149‑1 GCCAATGGTCGATAAATGGTTTCATGAGGCCGGAGTGACGCCTAATTACCCTATTGAGGTTGGCGGCGCTGGTACGGCAATCGAGTTGGTTCGTGGTGGCCTTGGAGTTACGTTCGTGAATAGTTTTAGCTTGATGGAACGGGCTGATA < 4:240934/149‑1 AATTATCCAGACCGAATGACTGCAGTTGGCTATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5066753‑5066904‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggccAATGGTCGATAAATGGTTTCATGAGGCCGGAGTGACGCCTAATTACACTATTGAGGTTGGCGGAGCTGGTACGGCAATCGAGTTGGTTCGTGGTGGCCTTGGAGTTACGTTCGTGAATAGTTTTAGCTTGATGGAACGGGCTGATA < NC_002947/5066928‑5066783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |