New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5066904	48 (0.750)	3 (0.050)	3/240	NT	6.1%	coding (633/906 nt)	PP_4464	LysR family transcriptional regulator
	?	NC_002947	= 5066928	47 (0.780)					coding (609/906 nt)	PP_4464	LysR family transcriptional regulator

TCCAGACCGAATGACTGCAGTTGGCTATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTG  >  NC_002947/5066758‑5067048                                                                                                                                                   |                                                                                                                                                    tCCAGACCGAATGACTGCAGTTGGCTATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTc                                                                                                                                                   <  8:122228/149‑1 (MQ=255)    aGACCGAATGACTGCAGTTGGCTATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCAt                                                                                                                                                 >  3:362068/1‑148 (MQ=255)          aaTGACTGCAGTTGGCTATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACATCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAACCCa                                                                                                                                          >  7:344840/1‑149 (MQ=255)              aCTGCAGTTGGCTATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTa                                                                                                                                      >  1:208013/1‑149 (MQ=255)                          tATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCGCCGCCAACCTCAATAGGGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTggc                                                                                                                          <  4:240934‑M2/149‑4 (MQ=255)                          tATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTACAAGGCCACCACGAACCAACTAGATTGCCGTACCAGCTCAGCCAACCTCAATAGTGTAATTAGTCGTAACTCAGGCCTCATGAAACCATTTATCGACCATTggc                                                                                                                          <  5:118506‑M2/149‑4 (MQ=255)                              aGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCaatggtcgataaatggtttcatgaggccgga                                                                                                                      <  5:3316‑M1/149‑32 (MQ=255)                               gCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGAt                                                                                                                     <  7:82401/149‑1 (MQ=255)                                       cATCAAGCTAAAACTATTCACGAACGTAACGCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCACCCTCAAAAGTGTAATTAGGCGTCACTCCGGCCTCATGAGACCATTTATCGACTCTTGGCCGGATAAGCCCCg                                                                                                             >  8:29527/1‑149 (MQ=255)                                        aTCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGa                                                                                                            <  4:362068/149‑1 (MQ=255)                                         tCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGAt                                                                                                           >  2:311438/1‑149 (MQ=255)                                               tAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATaa                                                                                                                   >  4:309354/1‑135 (MQ=255)                                               tAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATaa                                                                                                                   <  3:309354/135‑1 (MQ=255)                                               tAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAg                                                                                                                  <  5:194150/136‑1 (MQ=255)                                               tAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAg                                                                                                                  >  6:194150/1‑136 (MQ=255)                                                 aaaCTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTaa                                                                                                    <  1:311438/148‑1 (MQ=255)                                                 aaaCTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTaa                                                                                                    <  7:113345/148‑1 (MQ=255)                                                  aaCTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAAcc                                                                                                                                           >  1:253160/1‑108 (MQ=255)                                                  aaCTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAAcc                                                                                                                                           <  2:253160/108‑1 (MQ=255)                                                        tCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCaatggtcgataaatggtttcatgaggccggagt                                                                                                                    <  1:88270‑M1/125‑34 (MQ=255)                                                        tCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCaatggtcgataaatggtttcatgaggccggagt                                                                                                                    >  2:88270‑M1/1‑92 (MQ=255)                                                          aCGAAACTAACTCCAAGGCCACCACGCACCCACTCGATTGCCCTACCAGCTCCGCCAACCTCAATATTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACta                                                                                           <  8:338518/148‑1 (MQ=255)                                                            gAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAg                                                                                        >  6:361630/1‑149 (MQ=255)                                                                gTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCt                                                                                                       >  2:145358/1‑130 (MQ=255)                                                                gTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTaa                                                                                                    >  3:219380/1‑133 (MQ=255)                                                                gTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTaa                                                                                                    <  4:219380/133‑1 (MQ=255)                                                                     tCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTAt                                                                                                                                     <  2:327612/95‑1 (MQ=255)                                                                     tCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGa                                                                                                            >  7:271735/1‑120 (MQ=255)                                                                     tCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGa                                                                                                            <  8:271735/120‑1 (MQ=255)                                                                     tCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCaa                                                                                              >  1:15332/1‑134 (MQ=255)                                                                     tCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCaa                                                                                              <  2:15332/134‑1 (MQ=255)                                                                     tCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACACAGGCCTCATGAAAACATTTATCGACCATTGCCCGCATAACCCCCGATGCCATAAGAGCAACTATAC‑‑‑GCACCCCAt                                                                            >  4:280493/1‑149 (MQ=255)                                                                     tCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGACGTCACTCCGGCCTCATGAAACCATTTAt                                                                                                                                     >  1:327612/1‑95 (MQ=255)                                                                         aGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTaa                                                                        <  2:208013/149‑1 (MQ=255)                                                                             caccacGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACtat                                                                                          <  7:200733/130‑1 (MQ=255)                                                                             caccacGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCAcccc                                                                              <  2:281708/139‑1 (MQ=255)                                                                             caccacGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCAcccc                                                                              >  1:281708/1‑139 (MQ=255)                                                                             caccacGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGAAGCCTTAAGAGCAACtat                                                                                          >  8:200733/1‑130 (MQ=255)                                                                                    aaCCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAg                                                             >  3:329809/1‑149 (MQ=255)                                                                                                   cGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGctct                                              >  5:287633/1‑149 (MQ=255)                                                                                                   cGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGctct                                              >  5:369337/1‑149 (MQ=255)                                                                                                        cAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTACAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGa                                          >  5:407861/1‑148 (MQ=255)                                                                                                         aGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGaaa                                        <  4:329809/149‑1 (MQ=255)                                                                                                              cGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGTAACCATTTATCGACCATTGGCCGGATAAGGCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGa                                   <  3:280493/149‑1 (MQ=255)                                                                                                                 cAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGACCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACACCATATAACTGACTTGCAGTAACGACAGCGCTCTGCGAAAATTGAGCg                                >  6:219520/1‑149 (MQ=255)                                                                                                                     cTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAg                            >  5:74478/1‑149 (MQ=255)                                                                                                                       cAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGc                                                               >  5:324092/1‑112 (MQ=255)                                                                                                                       cAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGc                                                               <  6:324092/112‑1 (MQ=255)                                                                                                                         aTAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCAttt                                                                                                                                       <  2:186449/41‑1 (MQ=255)                                                                                                                         aTAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCAttt                                                                                                                                       >  1:186449/1‑41 (MQ=255)                                                                                                                                  ttAGGCGTCACTCCGGACTCATTAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAGCTCGCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAac                  <  1:122167/149‑1 (MQ=255)                                                                                                                                     ggCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAgat            >  6:38828/1‑149 (MQ=255)                                                                                                                                     ggCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGACCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAga             <  5:219520/148‑1 (MQ=255)                                                                                                                                         tCACTCCGGCCTCATGAAAACATTTATCGACAATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCGATCTAACTGACTTGCa                                                              <  5:337458/95‑1 (MQ=255)                                                                                                                                         tCACTCCGGCCTAATGAAACCATTTATCGACAATTGGCCGGATAAGACCCTATGCCTTAAGAGCAACTATAG‑‑‑GAACCCCATCTAAATGACTTGCa                                                              >  6:337458/1‑95 (MQ=255)                                                                                                                                           aCTCCGGCCTCATGAAACCATTTATCGACCATTggccggagtgacgcctaattacactattgaggttggcggagctggtacggcaatcgagttggttcgtggtggccttggagttacgttcgtga                                 >  2:88270‑M2/1‑33 (MQ=255)                                                                                                                                           aCTCCGGCCTCATGAAACCATTTATCGACCATTggccggagtgacgcctaattacactattgaggttggcggagctggtacggcaatcgagttggttcgtggtggccttggagttacgttcgtga                                 <  1:88270‑M2/125‑93 (MQ=255)                                                                                                                                             tCCGGCCTCATGAAACCATTTATCGACCATTggccggagtgacgcctaattacactattgaggttggcggagctggtacggcaatcgagttggttcgtggtggccttggagttacgttcgtgaatagttttagcttgatggaacgggct       <  5:3316‑M2/149‑119 (MQ=255)                                                                                                                                              cccgCCTCATGAAACCCTTTATCGACCCTTGGCCGGAAAAGCCCCGATGCCTAAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACt   <  3:8594/146‑1 (MQ=255)                                                                                                                                               cGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTg  <  5:38828/149‑1 (MQ=255)                                                                                                                                                 gCCaatggtcgataaatggtttcatgaggcctgagttacgactaattacactattgaggttggctgagctggtacggcaatctagttggttcgtggtggccttgtagttacgttcgtgaatagttttagcttgatggaacgggctgata   <  5:118506‑M1/149‑147 (MQ=255)                                                                                                                                                 gCCaatggtcgataaatggtttcatgaggccggagtgacgcctaattaccctattgaggttggcggcgctggtacggcaatcgagttggttcgtggtggccttggagttacgttcgtgaatagttttagcttgatggaacgggctgata   <  4:240934‑M1/149‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TCCAGACCGAATGACTGCAGTTGGCTATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTG  >  NC_002947/5066758‑5067048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.