New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5066904	48 (0.750)	3 (0.050)	3/240	NT	6.1%	coding (633/906 nt)	PP_4464	LysR family transcriptional regulator
	?	NC_002947	= 5066928	47 (0.780)					coding (609/906 nt)	PP_4464	LysR family transcriptional regulator

TATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTGCTAAATAACGTAGAGCTTTGATCTTC  >  NC_002947/5066783‑5067074                                                                                                                                                  |                                                                                                                                                      tATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCGCCGCCAACCTCAATAGGGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTggc                                                                                                                                                    <  4:240934‑M2/149‑4 (MQ=255) tATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTACAAGGCCACCACGAACCAACTAGATTGCCGTACCAGCTCAGCCAACCTCAATAGTGTAATTAGTCGTAACTCAGGCCTCATGAAACCATTTATCGACCATTggc                                                                                                                                                    <  5:118506‑M2/149‑4 (MQ=255)      gCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGAt                                                                                                                                               <  7:82401/149‑1 (MQ=255)              cATCAAGCTAAAACTATTCACGAACGTAACGCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCACCCTCAAAAGTGTAATTAGGCGTCACTCCGGCCTCATGAGACCATTTATCGACTCTTGGCCGGATAAGCCCCg                                                                                                                                       >  8:29527/1‑149 (MQ=255)               aTCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGa                                                                                                                                      <  4:362068/149‑1 (MQ=255)                tCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGAt                                                                                                                                     >  2:311438/1‑149 (MQ=255)                      tAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATaa                                                                                                                                             <  3:309354/135‑1 (MQ=255)                      tAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATaa                                                                                                                                             >  4:309354/1‑135 (MQ=255)                      tAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAg                                                                                                                                            >  6:194150/1‑136 (MQ=255)                      tAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAg                                                                                                                                            <  5:194150/136‑1 (MQ=255)                        aaaCTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTaa                                                                                                                              <  7:113345/148‑1 (MQ=255)                        aaaCTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTaa                                                                                                                              <  1:311438/148‑1 (MQ=255)                                 aCGAAACTAACTCCAAGGCCACCACGCACCCACTCGATTGCCCTACCAGCTCCGCCAACCTCAATATTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACta                                                                                                                     <  8:338518/148‑1 (MQ=255)                                   gAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAg                                                                                                                  >  6:361630/1‑149 (MQ=255)                                       gTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCt                                                                                                                                 >  2:145358/1‑130 (MQ=255)                                       gTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTaa                                                                                                                              >  3:219380/1‑133 (MQ=255)                                       gTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTaa                                                                                                                              <  4:219380/133‑1 (MQ=255)                                            tCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGa                                                                                                                                      >  7:271735/1‑120 (MQ=255)                                            tCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGa                                                                                                                                      <  8:271735/120‑1 (MQ=255)                                            tCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCaa                                                                                                                        >  1:15332/1‑134 (MQ=255)                                            tCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCaa                                                                                                                        <  2:15332/134‑1 (MQ=255)                                            tCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACACAGGCCTCATGAAAACATTTATCGACCATTGCCCGCATAACCCCCGATGCCATAAGAGCAACTATAC‑‑‑GCACCCCAt                                                                                                      >  4:280493/1‑149 (MQ=255)                                                aGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTaa                                                                                                  <  2:208013/149‑1 (MQ=255)                                                    caccacGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACtat                                                                                                                    <  7:200733/130‑1 (MQ=255)                                                    caccacGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCAcccc                                                                                                        >  1:281708/1‑139 (MQ=255)                                                    caccacGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCAcccc                                                                                                        <  2:281708/139‑1 (MQ=255)                                                    caccacGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGAAGCCTTAAGAGCAACtat                                                                                                                    >  8:200733/1‑130 (MQ=255)                                                           aaCCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAg                                                                                       >  3:329809/1‑149 (MQ=255)                                                                          cGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGctct                                                                        >  5:369337/1‑149 (MQ=255)                                                                          cGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGctct                                                                        >  5:287633/1‑149 (MQ=255)                                                                               cAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTACAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGa                                                                    >  5:407861/1‑148 (MQ=255)                                                                                aGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGaaa                                                                  <  4:329809/149‑1 (MQ=255)                                                                                     cGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGTAACCATTTATCGACCATTGGCCGGATAAGGCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGa                                                             <  3:280493/149‑1 (MQ=255)                                                                                        cAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGACCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACACCATATAACTGACTTGCAGTAACGACAGCGCTCTGCGAAAATTGAGCg                                                          >  6:219520/1‑149 (MQ=255)                                                                                            cTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAg                                                      >  5:74478/1‑149 (MQ=255)                                                                                              cAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGc                                                                                         >  5:324092/1‑112 (MQ=255)                                                                                              cAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGc                                                                                         <  6:324092/112‑1 (MQ=255)                                                                                                         ttAGGCGTCACTCCGGACTCATTAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAGCTCGCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAac                                            <  1:122167/149‑1 (MQ=255)                                                                                                            ggCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAgat                                      >  6:38828/1‑149 (MQ=255)                                                                                                            ggCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGACCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAga                                       <  5:219520/148‑1 (MQ=255)                                                                                                                tCACTCCGGCCTCATGAAAACATTTATCGACAATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCGATCTAACTGACTTGCa                                                                                        <  5:337458/95‑1 (MQ=255)                                                                                                                tCACTCCGGCCTAATGAAACCATTTATCGACAATTGGCCGGATAAGACCCTATGCCTTAAGAGCAACTATAG‑‑‑GAACCCCATCTAAATGACTTGCa                                                                                        >  6:337458/1‑95 (MQ=255)                                                                                                                  aCTCCGGCCTCATGAAACCATTTATCGACCATTggccggagtgacgcctaattacactattgaggttggcggagctggtacggcaatcgagttggttcgtggtggccttggagttacgttcgtga                                                           >  2:88270‑M2/1‑33 (MQ=255)                                                                                                                  aCTCCGGCCTCATGAAACCATTTATCGACCATTggccggagtgacgcctaattacactattgaggttggcggagctggtacggcaatcgagttggttcgtggtggccttggagttacgttcgtga                                                           <  1:88270‑M2/125‑93 (MQ=255)                                                                                                                    tCCGGCCTCATGAAACCATTTATCGACCATTggccggagtgacgcctaattacactattgaggttggcggagctggtacggcaatcgagttggttcgtggtggccttggagttacgttcgtgaatagttttagcttgatggaacgggct                                 <  5:3316‑M2/149‑119 (MQ=255)                                                                                                                     cccgCCTCATGAAACCCTTTATCGACCCTTGGCCGGAAAAGCCCCGATGCCTAAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACt                             <  3:8594/146‑1 (MQ=255)                                                                                                                      cGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTg                            <  5:38828/149‑1 (MQ=255)                                                                                                                             aTGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTGCTAAAt                      >  2:80971/1‑148 (MQ=255)                                                                                                                             aTGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTACAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTGCTaaa                       <  6:407861/147‑1 (MQ=255)                                                                                                                               gAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAAtt                                                                <  2:8261/104‑1 (MQ=255)                                                                                                                               gAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAAtt                                                                >  1:8261/1‑104 (MQ=255)                                                                                                                                      tttATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTGCTAAATAACGTAGAGc            >  2:337610/1‑149 (MQ=255)                                                                                                                                         aTCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTGCTAAATAACGTAGAGCttt         >  2:8524/1‑149 (MQ=255)                                                                                                                                          tCGCCCATTGGCCGGATCAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTGCTAAATAACGTAGAGCTTTg        <  8:344840/149‑1 (MQ=255)                                                                                                                                            gACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTGCTAAATAACGTAGAGCTTTGa       >  7:275923/1‑148 (MQ=255)                                                                                                                                            gACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTGCTAAATAACGTAGAGCTTTGa       >  5:185096/1‑148 (MQ=255)                                                                                                                                             aCCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTGCTAAATAACGTAGAGCTTTGATc     >  3:237150/1‑149 (MQ=255)                                                                                                                                                aTTGGCCGGATAATCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GAAACCCATCTAACTGACTTTCAGTAACGACCGCGCTCTGCTAAATTTGAGCGTCAGGCGATGCAACACATATGATTGGACTGCTAAATAACGTAGAGCTTTGATCTTc  <  3:240934/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      TATCAGCCCGTTCCATCAAGCTAAAACTATTCACGAACGTAACTCCAAGGCCACCACGAACCAACTCGATTGCCGTACCAGCTCCGCCAACCTCAATAGTGTAATTAGGCGTCACTCCGGCCTCATGAAACCATTTATCGACCATTGGCCGGATAAGCCCCGATGCCTTAAGAGCAACTATAG‑‑‑GCACCCCATCTAACTGACTTGCAGTAACGACCGCGCTCTGCGAAATTTGAGCGTCAGGCGATGCAACACAGATGATTGGACTGCTAAATAACGTAGAGCTTTGATCTTC  >  NC_002947/5066783‑5067074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.