New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5274012	22 (0.340)	4 (0.070)	4/228	NT	14.6%	intergenic (+34/+72)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
	?	NC_002947	= 5274059	27 (0.470)					intergenic (+81/+25)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein

GGGCGCTGTACATCGTAGGTAACCGGCATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5273857‑5274012 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgggcttgcccACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTCCTACGGGGGCGGTGGCGCGCCTACTTGCGGGCTTTCAGAATGACGAACTTGGGCGTTGCCGCCACCTGCTCCACCCCCCGGAACAA  <  NC_002947/5274059‑5273913                                                                                                                                                                                                                                                                                                                 GGGCGCTGTACATCGTAGGTAACCGGCATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCTCGCCACCGCCCCCGTAGGAGCGGG                                                                                                                                                            <  4:137628/149‑1  GGCGCTGTACATCGTAGGTAACCGGCATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGC                                                                                                                                                           <  8:155697/149‑1     GCTGTACATCGTAGGTAACCGGCATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGG                                                                                                                                                            <  7:248102/145‑1     GCTGTACATCGTAGGTAACCGGCATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGG                                                                                                                                                            >  8:248102/1‑145      CTGTACATCGTAGGTAACCGGCATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGC                                                                                                                                                       >  5:344144/1‑149       TGTACATCGTAGGTAACCGGCATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCC                                                                                                                                                      >  8:130554/1‑149                            ATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTT                                                                                                                                                         >  1:224151/1‑125                            ATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTT                                                                                                                                                         <  2:224151/125‑1                                                         TTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGG                                                                                                    <  6:278930/149‑1                                                                          GCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAA                                                                                                <  5:269134/136‑1                                                                          GCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAA                                                                                                >  6:269134/1‑136                                                                          GCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAG                                                                                                                       <  6:35494/113‑1                                                                                                                                                AGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTCCTACGGGGGCGGTGGCGCGCCTACTTGCGGGCTTTCA                                                   >  3:293799/1‑111                                                                                                                                                AGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTCCTACGGGGGCGGTGGCGCGCCTACTTGCGGGCTTTCA                                                   <  4:293799/111‑1                                                                                                                                                  CGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTCCTACGGGGGCGGTGGCGCGCCTACTTGCGGGCTTTCAGAATGACGAACTTGGGCGTTGCCGCCACCTGCTCCACCCC           <  4:385353/149‑1                                                                                                                                                           CCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTCCTACGGGGGCGGTGGCGCGCCTACTTGCGGGCTTTCAGAATGACGAACTTGGGCGTTGCCGCCACCTGCTCCACCCCCCGGAACAA  >  6:286016/1‑149                                                                                                                                                                                                                                                                                                                 GGGCGCTGTACATCGTAGGTAACCGGCATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5273857‑5274012 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgggcttgcccACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTCCTACGGGGGCGGTGGCGCGCCTACTTGCGGGCTTTCAGAATGACGAACTTGGGCGTTGCCGCCACCTGCTCCACCCCCCGGAACAA  <  NC_002947/5274059‑5273913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.