New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5274012	22 (0.340)	4 (0.070)	4/228	NT	14.6%	intergenic (+34/+72)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
	?	NC_002947	= 5274059	27 (0.470)					intergenic (+81/+25)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein

CATCGTAGGTAACCGGCATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCA  >  NC_002947/5273867‑5274160                                                                                                                                                  |                                                                                                                                                     cATCGTAGGTAACCGGCATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCcgcg                                                                                                                                                   <  7:47838/149‑1 (MQ=255)              cGGCATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACg                                                                                                                                      >  8:81598/1‑149 (MQ=255)                       ggCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCtgt                                                                                                                                 <  5:39612/145‑1 (MQ=255)                         cTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATc                                                                                                                           <  6:344144/149‑1 (MQ=255)                              acaGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGa                                                                                                                                                  >  6:74800/1‑121 (MQ=255)                              acaGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGa                                                                                                                                                  <  5:74800/121‑1 (MQ=255)                              acaGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAgcg                                                                                                                      >  2:18387/1‑149 (MQ=255)                                aGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCtgtg                                                                                                                                <  8:156178/137‑1 (MQ=255)                                aGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCtgag                                                                                                                                >  7:156178/1‑135 (MQ=255)                                    aGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGc                                                                                                                <  5:262970/149‑1 (MQ=255)                                      cTGGCGCGGTTGTTCCGGGTGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCt                                                                                                              <  7:147352/149‑1 (MQ=255)                                            cgGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCg                                                                                                        >  6:117540/1‑149 (MQ=255)                                             ggTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGt                                                                                                       <  5:117540/149‑1 (MQ=255)                                               ttgttCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCacgaagcaggcaacgcgctagatggcacaggcgttgccggtgttcgcgg                                                                                                     <  6:278930‑M1/149‑50 (MQ=255)                                               ttgttCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgg                                                                                                     >  6:286016‑M2/1‑147 (MQ=255)                                                        ggggTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccg                                                                                            <  4:385353‑M2/149‑12 (MQ=255)                                                                gCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCacgaagcaggcaacgcgctagatggcacaggcgttgccggtgttcgcgggcaa                                                                                                 >  6:269134‑M1/1‑83 (MQ=255)                                                                gCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCacgaagcaggcaacgcgctagatggcacaggcgttgccggtgttcgcgggcaa                                                                                                 <  5:269134‑M1/136‑54 (MQ=255)                                                                gCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCacgaagcaggcaacgcgctagatggcacag                                                                                                                        <  6:35494‑M1/113‑31 (MQ=255)                                                                  aGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGctct                                                                                  >  4:20421/1‑149 (MQ=255)                                                                    gTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCtt                                                                                 >  5:102250/1‑148 (MQ=255)                                                                                       tCGTCTTTCTCAACGCCCGCATGTAGGCGCGCCACCGCCCCCGTTGGAGCGGGCTTGCCCGCTAACACCGGCACCGCCTGTGCCATCTAGCGCTTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGc                                                              <  1:18387/148‑1 (MQ=255)                                                                                       tCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCGTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGc                                                              <  7:130554/148‑1 (MQ=255)                                                                                                tGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccgct                                                                                          <  4:293799‑M2/111‑14 (MQ=255)                                                                                                tGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccgct                                                                                          >  3:293799‑M2/1‑98 (MQ=255)                                                                                                tGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGcccc                                                    >  1:367608/1‑149 (MQ=255)                                                                                                   acgCCCCCATGTTGGCGCCCCCCCGCCCCGTTTTGTGGGGGTTTGCCCGCTAACACGGTAAACGTTTGTGCAATTTCGCGTGTTGCTTGTTTGGTGGTAATGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCAt                                                 <  2:367608/147‑1 (MQ=255)                                                                                                         gCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGc                                                                                                                >  6:305280/1‑80 (MQ=255)                                                                                                                 gcgcgcCACCGCCCCCGTAGGTGCGGGCTTGCCCGCTAACACCGGAAACGCCTGTGCCATCTAGCGCTTTGCCTGCTTCGTGGGAAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATca                                   <  6:102250/149‑1 (MQ=255)                                                                                                                           gCCCCCGTAGGAGCGGGCTTGCCCGCGAACAACGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGgccgc                         >  1:92381/1‑149 (MQ=255)                                                                                                                                     gAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAgc               >  3:126171/1‑149 (MQ=255)                                                                                                                                     gAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAgc               >  2:332330/1‑149 (MQ=255)                                                                                                                                      aGCGGGCTTGCCCacgaagcaggcaacgcgctagatggcacaggcgttgccggtgttcgcgggcaagcccgctcctacgggggcggtggcgcgcctacttgcgggctttca                                                    <  4:293799‑M1/111‑99 (MQ=255)                                                                                                                                      aGCGGGCTTGCCCacgaagcaggcaacgcgctagatggcacaggcgttgccggtgttcgcgggcaagcccgctcctacgggggcggtggcgcgcctacttgcgggctttca                                                    >  3:293799‑M1/1‑13 (MQ=255)                                                                                                                                        cGGGCTTGCCCacgaagcaggcaacgcgctagatggcacaggcgttgccggtgttcgcgggcaagcccgctcctacgggggcggtggcgcgcctacttgcgggctttcagaatgacgaacttgggcgttgccgccacctgctccacccc            <  4:385353‑M1/149‑139 (MQ=255)                                                                                                                                         gggCTTGCCCGCGAACACCGTCACCGCCTGTGCCATCTACCGCGTTGCCTGGTGCGTGGGAAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTg           <  7:81598/149‑1 (MQ=255)                                                                                                                                             ttGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccgctcctacgggggcggtggcgcgcctacttgcgggctttcagaatgacgaacttgggcgttgccgccacctgc                    >  6:269134‑M2/1‑53 (MQ=255)                                                                                                                                             ttGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccgctcctacgggggcggtggcgcgcctacttgcgggctttcagaatgacgaacttgggcgttgccgccacctgc                    <  5:269134‑M2/136‑84 (MQ=255)                                                                                                                                                cccGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGa        <  7:250950/145‑1 (MQ=255)                                                                                                                                                cccGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGa        >  8:250950/1‑145 (MQ=255)                                                                                                                                                 ccacgaagcaggcaacgcgctagatggcacaggcgttgccggtgttcgcgggcaagcccgctcctacgggggcggtggcgcgcctacttgcgggctttcagaatgacgaacttgggcgttgccgccacctgctccaccccccggaacaa   >  6:286016‑M1/1‑2 (MQ=255)                                                                                                                                                 ccGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccgctcctacgggggcggtggcgcgcctacttgcgggctttcagaatgacgaacttgggcgttgccgccacctgctccaccccccggaacaa   <  6:278930‑M2/149‑101 (MQ=255)                                                                                                                                                 ccGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCt    >  2:244168/1‑148 (MQ=255)                                                                                                                                                  cgcgAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCa  >  8:313228/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CATCGTAGGTAACCGGCATCTGGGCTATCACAGCAAGCTGGCGCGGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCA  >  NC_002947/5273867‑5274160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.