New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5274012	22 (0.340)	4 (0.070)	4/228	NT	14.6%	intergenic (+34/+72)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
	?	NC_002947	= 5274059	27 (0.470)					intergenic (+81/+25)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein

GGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCG  >  NC_002947/5273911‑5274191                                                                                                                                                     |                                                                                                                                     ggTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGt                                                                                                                                      <  5:117540/149‑1 (MQ=255)   ttgttCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgg                                                                                                                                    >  6:286016‑M2/1‑147 (MQ=255)            ggggTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccg                                                                                                                           <  4:385353‑M2/149‑12 (MQ=255)                      aGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGctct                                                                                                                 >  4:20421/1‑149 (MQ=255)                        gTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCtt                                                                                                                >  5:102250/1‑148 (MQ=255)                                           tCGTCTTTCTCAACGCCCGCATGTAGGCGCGCCACCGCCCCCGTTGGAGCGGGCTTGCCCGCTAACACCGGCACCGCCTGTGCCATCTAGCGCTTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGc                                                                                             <  1:18387/148‑1 (MQ=255)                                           tCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCGTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGc                                                                                             <  7:130554/148‑1 (MQ=255)                                                    tGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccgct                                                                                                                         >  3:293799‑M2/1‑98 (MQ=255)                                                    tGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccgct                                                                                                                         <  4:293799‑M2/111‑14 (MQ=255)                                                    tGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGcccc                                                                                   >  1:367608/1‑149 (MQ=255)                                                       acgCCCCCATGTTGGCGCCCCCCCGCCCCGTTTTGTGGGGGTTTGCCCGCTAACACGGTAAACGTTTGTGCAATTTCGCGTGTTGCTTGTTTGGTGGTAATGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCAt                                                                                <  2:367608/147‑1 (MQ=255)                                                                     gcgcgcCACCGCCCCCGTAGGTGCGGGCTTGCCCGCTAACACCGGAAACGCCTGTGCCATCTAGCGCTTTGCCTGCTTCGTGGGAAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATca                                                                  <  6:102250/149‑1 (MQ=255)                                                                               gCCCCCGTAGGAGCGGGCTTGCCCGCGAACAACGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGgccgc                                                        >  1:92381/1‑149 (MQ=255)                                                                                         gAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAgc                                              >  3:126171/1‑149 (MQ=255)                                                                                         gAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAgc                                              >  2:332330/1‑149 (MQ=255)                                                                                             gggCTTGCCCGCGAACACCGTCACCGCCTGTGCCATCTACCGCGTTGCCTGGTGCGTGGGAAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTg                                          <  7:81598/149‑1 (MQ=255)                                                                                                 ttGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccgctcctacgggggcggtggcgcgcctacttgcgggctttcagaatgacgaacttgggcgttgccgccacctgc                                                   <  5:269134‑M2/136‑84 (MQ=255)                                                                                                 ttGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccgctcctacgggggcggtggcgcgcctacttgcgggctttcagaatgacgaacttgggcgttgccgccacctgc                                                   >  6:269134‑M2/1‑53 (MQ=255)                                                                                                    cccGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGa                                       <  7:250950/145‑1 (MQ=255)                                                                                                    cccGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGa                                       >  8:250950/1‑145 (MQ=255)                                                                                                     ccGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccgctcctacgggggcggtggcgcgcctacttgcgggctttcagaatgacgaacttgggcgttgccgccacctgctccaccccccggaacaa                                  <  6:278930‑M2/149‑101 (MQ=255)                                                                                                     ccGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCt                                   >  2:244168/1‑148 (MQ=255)                                                                                                      cgcgAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCa                                 >  8:313228/1‑149 (MQ=255)                                                                                                         gAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGcccc                                                                                   >  5:46487/1‑96 (MQ=255)                                                                                                         gAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGcccc                                                                                   <  6:46487/96‑1 (MQ=255)                                                                                                             acCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCa                          <  1:244168/149‑1 (MQ=255)                                                                                                                     cGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGc                   >  3:196813/1‑148 (MQ=255)                                                                                                                        cTGTGCCATCTAGCGCGTTGCCTGCTTCGTgggcaagcccgctcctacgggggcggtggcgcgcctacttgcgggctttcagaatgacgaacttgggcgttgccgccacctgc                                                   <  6:35494‑M2/113‑84 (MQ=255)                                                                                                                         tgggCCATCTCGCGCGTGGCCGGCTTCGTGGGAAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAg              <  4:126171/146‑1 (MQ=255)                                                                                                                                  tAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGAt                       <  5:35729/131‑1 (MQ=255)                                                                                                                                  tAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGAt                       >  6:35729/1‑131 (MQ=255)                                                                                                                                    gcgcGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAgg                                                            >  6:195776/1‑92 (MQ=255)                                                                                                                                    gcgcGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAgg                                                            <  5:195776/92‑1 (MQ=255)                                                                                                                                    gcgcGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCa      <  7:313228/146‑1 (MQ=255)                                                                                                                                     cgcgTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCg  >  7:87487/1‑149 (MQ=255)                                                                                                                                             cTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATg                                                                               >  1:220565/1‑64 (MQ=255)                                                                                                                                                     |                                                                                                                                     GGTTGTTCCGGGGGGTGGAGCAGGTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCG  >  NC_002947/5273911‑5274191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.