New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5519195	69 (1.080)	4 (0.070)	4/244	NT	6.2%	coding (535/789 nt)	PP_4852	AraC family transcriptional regulator
	?	NC_002947	= 5519293	55 (0.890)					coding (437/789 nt)	PP_4852	AraC family transcriptional regulator

GAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5519043‑5519195 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaCCCTGGCCTGCTACCTGCCGTTTGCCCACAGCGATGGCTTGCGCCAGGTGCTCGACGCGCTCAGCGCCGAGCCGGGGGACAACCGCCCGCTGGCCGACTGGGCCGCACGCGTACACGTCAGCGAACGCACCCTGGCCCGCCAGT  <  NC_002947/5519293‑5519150                                                                                                                                                                                                                                                                                                           GAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGG                                                                                                                                                      >  1:221759/1‑149  AAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGC                                                                                                                                                     >  2:261552/1‑149                           CGGCTTCCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCA                                                                                                                                                  <  1:126230/127‑1                           CGGCTTCCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCA                                                                                                                                                  >  2:126230/1‑127                                                         AACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCACCCTGGCCTGCTACCTGCCGTTTGCCCACAGCGATGGCTTGCGCCAGGTGCT                                                                                              >  1:143207/1‑149                                                                                             CCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCACCCTGGCCTGCTACCTGCCGTTTGCCCACAGCGATGGCTTGCGCCAGGTGCTCGACGCGCTCAGCGCCGAGCCGGGGGACAACCGCCC                                                          >  4:259569/1‑149                                                                                                           AACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCACCCTGGCCTGCTACCTGCCGTTTGCCCACAGCGATGGCTTGCGCCAGGTGCTCGACGCGCTCAGCGCCGAGCCGGGGGACAACCGCCCGCTGGCCGACTGGG                                            <  3:259569/149‑1                                                                                                            ACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCACCCTGGCCTGCTACCTGCCGTTTGCCCACAGCGATGGCTTGCGCCAGGTGCTCGACGCGCTCAGCGCCGAGCCGGGGGACAACCGCCCGCTGGCCGACTGGGC                                           <  2:143207/149‑1                                                                                                                                                     GCCCACCCTGGCCTGCTACCTGCCGTTTGCCCACAGCGATGGCTTGCGCCAGGTGCTCGACGCGCTCAGCGCCGAGCCGGGGGACAACCGCCCGCTGGCCGACTGGGCCGCACGCGTACACGTCAGCGAACGCACCCTGGCCCGCCAGT  >  3:210685/1‑149                                                                                                                                                     GCCCACCCTGGCCTGCTACCTGCCGTTTGCCCACAGCGATGGCTTGCGCCAGGTGCTCGACGCGCTCAGCGCCGAGCCGGGGGACAACCGCCCGCTGGCCGACTGGGCCGCACGCGTACACGACAGCGAACGCACCCTGGCCCGCCAGT  >  3:257853/1‑149                                                                                                                                                     GCCCACCCTGGCCTGCTACCTGCCGTTTGCCCACAGCGATGGCTTGCGCCAGGTGCTCGACGCGCTCAGCGCCGAGCCG                                                                        <  3:282653/79‑1                                                                                                                                                     GCCCACCCTGGCCTGCTACCTGCCGTTTGCCCACAGCGATGGCTTGCGCCAGGTGCTCGACGCGCTCAGCGCCGAGCCG                                                                        >  4:282653/1‑79                                                                                                                                                       CCACCCTGGCCTGCTACCTGCCGTTTGCCCACAGCGATGGCTTGCGCCAGGTGCTCGACGCGCTCAGCGCCGAGCCGGGGGACAACCGCCCGCTGGCCGACTGGGCCGCACGCGTAC                                <  3:290088/117‑1                                                                                                                                                       CCACCCTGGCCTGCTACCTGCCGTTTGCCCACAGCGATGGCTTGCGCCAGGTGCTCGACGCGCTCAGCGCCGAGCCGGGGGACAACCGCCCGCTGGCCGACTGGGCCGCACGCGTAC                                >  4:290088/1‑117                                                                                                                                                                                                                                                                                                           GAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5519043‑5519195 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaCCCTGGCCTGCTACCTGCCGTTTGCCCACAGCGATGGCTTGCGCCAGGTGCTCGACGCGCTCAGCGCCGAGCCGGGGGACAACCGCCCGCTGGCCGACTGGGCCGCACGCGTACACGTCAGCGAACGCACCCTGGCCCGCCAGT  <  NC_002947/5519293‑5519150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.