New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5552330 = | 53 (0.830) | 4 (0.070) | 3/240 | NT | 7.1% | coding (1559/1566 nt) | PP_4882 | iron ABC transporter permease |
? | NC_002947 | 5552377 = | 54 (0.890) | intergenic (+40/+621) | PP_4882/PP_5717 | iron ABC transporter permease/hypothetical protein |
TTGTTACCCTCTTGGGTGGGGCTTGTAGTATCTACGACCTTGTTCTTTGCTTTCAACTGGCTAGTGAGAGTTTTAAAGTGAACTTGTGATGAAGTCTAGGCACTCAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5552481‑5552330 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagcctGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATCT > NC_002947/5552377‑5552518 TTGTTACCCTCTTGGGTGGGGCTTGTAGTATCTACGACCTTGTTCTTTGCTTTCAACTGGCTAGTGAGAGTTTTAAAGTGAACTTGTGATGAAGTCTAGGCACTCAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAA < 5:284447/148‑1 AGAGTTTTAAAGTGAACTTGTGATGAAGTCTAGGCACTCAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCA < 7:390438/81‑1 AGAGTTTTAAAGTGAACTTGTGATGAAGTCTAGGCACTCAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCA > 8:390438/1‑81 TCAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGG > 3:44374/1‑148 TCAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAG < 3:149036/116‑1 TCAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAG > 4:149036/1‑116 GTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAA < 4:44374/148‑1 CAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATCT < 6:284032/149‑1 AAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATCT > 6:402701/1‑148 TTGTTACCCTCTTGGGTGGGGCTTGTAGTATCTACGACCTTGTTCTTTGCTTTCAACTGGCTAGTGAGAGTTTTAAAGTGAACTTGTGATGAAGTCTAGGCACTCAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5552481‑5552330 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagcctGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATCT > NC_002947/5552377‑5552518 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |