| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5605610 = | 63 (0.980) | 9 (0.150) | 7/244 | NT | 13.3% | coding (337/1419 nt) | PP_4926 | HlyD family secretion protein |
| ? | NC_002947 | 5605657 = | 57 (0.930) | coding (290/1419 nt) | PP_4926 | HlyD family secretion protein | |||||
ATGTTCATCGGGCTGGCGCTTGCCTGGGCTTGCATCGGTGAGATCGATGTCATCGCCAGTGCCGAAGGCAAGATCGTGCCCAGTGGCAGGAGCAAGTTGATACAGGCCAGCGAGGTC‑GCGGTGGTGCAGTCGATCCACGTCGTCGATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5605760‑5605610‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACATCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAGGTAGCGCGGCAAGGGATGCACTGGC > NC_002947/5605657‑5605803 ATGTTCATCGGGCTGGCGCTTGCCTGGGCTTGCATCGGTGAGATCGATGTCATCGCCAGTGCCGAAGGCAAGATCGTGCCCAGTGGCAGGAGCAAGTTGATACAGGCCAGCGAGGTCAGCGGTGGTGCAGTCGATCCACGTCGTCGATG < 1:249920/149‑1ATGTTCATCGGGCTGGCGCTTGCCTGGGCTTGCATCGGTGAGATCGATGTCATCGCCAGTGCCGAAGGCAAGATCGTGCCCAGTGGCAGGAGCAAGTTGATACAGGCCAGCGAGGTC‑GCGGTGGTGCAGTCGATCCACGTCGTCGATG < 4:148673/148‑1ATGTTCATCGGGCTGGCGCTTGCCTGGGCTTGCATCGGTGAGATCGATGTCATCGCCAGTGCCGAAGGCAAGATCGTGCCCAGTGGCAGGAGCAAGTTGATACAGGCCAGCGAGGTC‑GCGGTGGTGCAGTCGATCCACGTCGTCGATG < 4:760/148‑1 GTTCATCGGGCTGGCGCTTGCCTGGGCTTGCATCGGTGAGATCGATGTCATCGCCAGTGCCGAAGGCAAGATCGTGCCCAGTGGCAGGAGCAAGTTGATACAGGCCAGCGAGGTC‑GCGGTGGTGCAGTCGATCCACGTCGTCGATGGC > 3:112705/1‑148 TACAGGCCAGCGAGGTC‑GCGGTGGTGCAGTCGATCCACGTCGTCGATGGCCTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACATCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGAT > 5:293801/1‑149 ACAGGCCAGCGAGGTC‑GCGGTGGTGCAGTCGATCCACGTCGTCGATGGCCTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACATCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGAT > 5:234103/1‑148 AGGCCAGCGAGGTC‑GCGGTGGTGCAGTCGATCCACGTCGTCGATGGCCTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACATCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAA > 1:29466/1‑149 GGCCAGCGAGGTC‑GCGGTGGTGCAGTCGATCCACGTCGTCGATGGCCTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACATCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAA > 5:59386/1‑148 GCCAGCGAGGTC‑GCGGTGGTGCAGTCGATCCACGTCGTCGATGGCCTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACAT < 3:8950/104‑1 GCCAGCGAGGTC‑GCGGTGGTGCAGTCGATCCACGTCGTCGATGGCCTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACAT > 4:8950/1‑104 TGCAGTCGATCCACGTCGTCGATGGCCTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACATCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAG < 2:29466/149‑1 TGCAGTCGATCCACGTCGTCGATGGCCTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACATCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAG < 6:293801/149‑1 TGCAGTCGATCCACGTCGTCGATGGCCTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACATCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAG < 6:59386/149‑1 TCGATGGCCTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACATCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAGGTATCGCGGCAAGGGATG < 6:234103/149‑1 GCCTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACATCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAGGTAGCGCGGCAAGGGATGCACT < 4:1871/147‑1 CCTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACATCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAGGTAGCGCGGCAAGGGATGCACTGGC < 8:381322/149‑1 ATGTTCATCGGGCTGGCGCTTGCCTGGGCTTGCATCGGTGAGATCGATGTCATCGCCAGTGCCGAAGGCAAGATCGTGCCCAGTGGCAGGAGCAAGTTGATACAGGCCAGCGAGGTC‑GCGGTGGTGCAGTCGATCCACGTCGTCGATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5605760‑5605610‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccTGTATCAACTTGCTCCTGCCACTGGGCACGATCTTGCCTTCGGCACTGGCGATGACATCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAGGTAGCGCGGCAAGGGATGCACTGGC > NC_002947/5605657‑5605803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |