| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5709819 | 42 (0.660) | 4 (0.070) | 4/238 | NT | 9.2% | coding (3837/4761 nt) | PP_5009 | hypothetical protein |
| ? | NC_002947 | = 5709836 | 40 (0.670) | coding (3854/4761 nt) | PP_5009 | hypothetical protein | |||||
CCACGACGGGCTGGCAGCCACCGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5709672‑5709819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctggacAGTTCGCGTATGTATTCGTCCAGCACGTCAGCGACCAGCGCAGGCGAGTCCAGTGTCCTCATGTATTGGGCGCGATCCAGCACGTTACGGTATTTCTGAAGGATATCCTCAAGCAGTTCGGCTTTGACCTGGGCCGTCTCTTCG < NC_002947/5709836‑5709693 CCACGACGGGCTGGCAGCCACCGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGAC < 8:223725/148‑1 CACGACGGGCTGGCAGCCACCGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTTCGAGGATATCCTTCAGAAATACCGTAACGAGCTGCATCGCGCCCAATACATGAGGACACTGGACTCGACTGCGCTGTTCGCTGACTTGCTGTAC > 1:318193/1‑148 CCACCGAAGAGACGGCCCAGGTCACAGCCGAACTGCTT‑GAGGATATCCAACAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACCCTGGACTCGCCTGCGCTGGTCCCTGCCCTGCTGGACAGTTCGCCTATCGATTCc > 5:168485/1‑148 CAGGTCAAAGCCGAACTGCTT‑GAGGTTATGGTTCAGAAATCCCGTAAGGTGCTGGATCGCGCCCAATACTTGAGGACACTGGACTGGCGTGCGGTGGTCGCTGACGTGCTGGACAGTTCGCGTATGTATTCGTCCAGCACGTCAGCGAC < 6:168485/149‑1 ATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACAGTTCGCGTATGTATTCGTCCAGC > 7:37529/1‑83 ATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACAGTTCGCGTATGTATTCGTCCAGC < 8:37529/83‑1 GCTGGACAGTTCGCGTATGTATTCGTCCAGCACGTCAGCGACCAGCGCAGGCGAGTCCAGTGTCCTCATGTATTGGGCGCGATCCAGCACGTTACGGTATTTCTGAAGGATATCCTCAAGCAGTTCGGCTTTGACCTGGG > 5:374658/1‑140 GCTGGACAGTTCGCGTATGTATTCGTCCAGCACGTCAGCGACCAGCGCAGGCGAGTCCAGTGTCCTCATGTATTGGGCGCGATCCAGCACGTTACGGTATTTCTGAAGGATATCCTCAAGCAGTTCGGCTTTGACCTGGG < 6:374658/140‑1 CTGGACAGTTCGCGTATGTATTCGTCCAGCACGTCAGCGACCAGCGCAGGCGAGTCCAGTGTCCTCATGTATTGGGCGCGATCCAGCACGTTACGGTATTTCTGAAGGATATCCTCAAGCAGTTCGGCTTTGACCTGGGCCGTCTCTT < 3:213721/148‑1 GACTGTTCGCGTATGTATTCGTCCAGCACGTCAGCGACCAGCGCAGGCGAGTCCAGTGTCCTCATGTATTGGGCGCGATCCAGCACGTTACGGTATTTCTGAAGGATATCGTCAAGCAGTTCGGCTTTGACCTTGGCCGTCTCTTCG < 7:293656/147‑1 GACAGTTCGCGTATGTATTCGTCCAGCACGTCAGCGACCAGCGCAGGCGAGTCCAGTGTCCTCATGTATTGGGCGCGATCCAGCACGTTACGGTATTTCTGAAGGATATCCTCAAGCAGTTC < 1:373891/122‑1 GACAGTTCGCGTATGTATTCGTCCAGCACGTCAGCGACCAGCGCAGGCGAGTCCAGTGTCCTCATGTATTGGGCGCGATCCAGCACGTTACGGTATTTCTGAAGGATATCCTCAAGCAGTTC > 2:373891/1‑122 CCACGACGGGCTGGCAGCCACCGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5709672‑5709819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctggacAGTTCGCGTATGTATTCGTCCAGCACGTCAGCGACCAGCGCAGGCGAGTCCAGTGTCCTCATGTATTGGGCGCGATCCAGCACGTTACGGTATTTCTGAAGGATATCCTCAAGCAGTTCGGCTTTGACCTGGGCCGTCTCTTCG < NC_002947/5709836‑5709693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |