New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5709819	42 (0.660)	4 (0.070)	4/238	NT	9.2%	coding (3837/4761 nt)	PP_5009	hypothetical protein
	?	NC_002947	= 5709836	40 (0.670)					coding (3854/4761 nt)	PP_5009	hypothetical protein

CGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCATCCGCGTTGACCGAGGTCGA  >  NC_002947/5709693‑5709978                                                                                                                                                |                                                                                                                                               cGAAGAGACGGCCAAGGTCAAAGCCGAACTGCTTGACGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACAgtc                                                                                                                                             <  7:293656‑M2/147‑4 (MQ=255)   aaGAGACGGCCCAGGTCAAAGCCGAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTgtccag                                                                                                                                          <  3:213721‑M2/148‑7 (MQ=255)      agaCGGCCCAGGTCAAAGCCGAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCAt                                                                                                                                       >  1:153714/1‑148 (MQ=255)        aCGTCCCAGGTCAAAGCCTAACTGCTTGAGTATATCATTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGATGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTa                                                                                                                                     <  4:365793/148‑1 (MQ=255)          ggCCCAGGTCAAAGCCGAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTAcc                                                                                                                                   >  3:36039/1‑148 (MQ=255)            cccAGGTCAAAGCCGAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTgtccagc                                                                                                                                         <  6:374658‑M2/140‑8 (MQ=255)            cccAGGTCAAAGCCGAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTgtccagc                                                                                                                                         >  5:374658‑M2/1‑133 (MQ=255)             ccAGGTCAAAGCCGAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGATACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTAcc                                                                                                                                   >  3:381700/1‑145 (MQ=255)                 gTCAAAGCCGAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCAc                                                                                                                           <  3:343323/149‑1 (MQ=255)                  tCAAAGCCGAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACg                                                                                                                          <  4:213721/149‑1 (MQ=255)                    aaaGCCGAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACgg                                                                                                                         <  4:36039/148‑1 (MQ=255)                    aaaGCCGAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACg                                                                                                                          >  5:425420/1‑147 (MQ=255)                          gAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTgtc                                                                                                                                             >  2:373891‑M2/1‑119 (MQ=255)                          gAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTgtc                                                                                                                                             <  1:373891‑M2/122‑4 (MQ=255)                          gAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGagcagc                                                                                                                   >  7:74830/1‑148 (MQ=255)                               gCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACt                                                                                                               >  6:237256/1‑147 (MQ=255)                                   gAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGATACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAgc                                                                                                           <  4:381700/147‑1 (MQ=255)                                   gAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAg                                                                                                            <  1:229109/146‑1 (MQ=255)                                    aGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAgcgc                                                                                                         <  8:74830/148‑1 (MQ=255)                                            cTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGAc                                                                                                <  5:177508/149‑1 (MQ=255)                                            cTTCAGAAATACCGTAACGTGCTGCATAGCGCCCAATACATGAGCACACTGGACTCGCCTGCGCTGGACGCTGACGTGCTGGACGAATACATACGCGAACTGTCAAGCATTACCCAGATCACGGAGCAGCAACTCAGCGCGACCCTGAc                                                                                                >  3:202487/1‑149 (MQ=255)                                                      aCCGTCTCGTGCTGGATCTGGCCCTATACATGAGGTCACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACTTACGCTAACTGTCCAGCATTACCCAGATCACGGAGCAGAAACTGAGCGCGACCCTGACCAACCTCGa                                                                                       <  8:293656/148‑1 (MQ=255)                                                        cGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCAtt                                                                                                                                      <  7:133768/99‑1 (MQ=255)                                                        cGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCAtt                                                                                                                                      >  8:133768/1‑99 (MQ=255)                                                                    gATCGCGAACAATACATGAGGACACTGGACTCGCCTGAGCTGGTCGATGAAGTGCTGGACGAATAAATACTCGAACTGTCCAGCATTAACCAGATAAAGGAGCAGCAACTGAGCGCGACCCTTACCAAc                                                                                            >  6:66411/1‑129 (MQ=255)                                                                               aTACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAg                                                             <  2:134068/149‑1 (MQ=255)                                                                                  cATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAgcg                                                           <  5:237256/148‑1 (MQ=255)                                                                                      aGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCt                                                       <  2:153714/148‑1 (MQ=255)                                                                                       ggACACTGGACTCGCCTGCGCTGGGCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTAc                                                     <  6:425420/149‑1 (MQ=255)                                                                                        gACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCt                                                                                          >  3:170946/1‑111 (MQ=255)                                                                                        gACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCt                                                                                          <  4:170946/111‑1 (MQ=255)                                                                                           acTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATc                                                 >  4:132344/1‑149 (MQ=255)                                                                                                  tCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCg                                           >  5:400213/1‑148 (MQ=255)                                                                                                  tCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCg                                           >  1:76174/1‑148 (MQ=255)                                                                                                         cgcTTGTCGCTGACGTGCTGGAAGTATACATACGCGTACTGTCCAGCATTACCCAGATCACTGAGCAGCTACTGAGCGCGACCCTGACAAACCTCGACAGCGGCATCAGTCCCCCCTCGCCATCGCCCTACGATCTCCCAGCAACGATc                                   <  4:202487/149‑1 (MQ=255)                                                                                                         cgcTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACAAt                                    <  3:132344/148‑1 (MQ=255)                                                                                                          gcTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCa                                  <  4:88588/149‑1 (MQ=255)                                                                                                            tGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGagcagc                                                                                                                   >  3:335338/1‑66 (MQ=255)                                                                                                            tGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGagcagc                                                                                                                   <  4:335338/66‑1 (MQ=255)                                                                                                            tGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAgg                                >  1:334468/1‑149 (MQ=255)                                                                                                              gTCGCTGACGTGCTGGACGAATACATACGCGAACTgtccagcacgtcagcgaccaccgcacgccagtccagtgtcctcaagtattgggcgcgatccagcaccttacgggatttctgaaccataacctcaagcagttcggctttgacctg                              <  6:168485‑M2/149‑115 (MQ=255)                                                                                                              gTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGgcg                              >  1:343303/1‑149 (MQ=255)                                                                                                                        tGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCATc                    <  6:400213/149‑1 (MQ=255)                                                                                                                         gCTGGACGAATACATACGCGAACTgtccagcacgtcagcgaccagcgcaggcgagtccagtgtcctcatgtattgggcgcgat                                                                                     <  8:37529‑M2/83‑60 (MQ=255)                                                                                                                         gCTGGACGAATACATACGCGAACTgtccagcacgtcagcgaccagcgcaggcgagtccagtgtcctcatgtattgggcgcgat                                                                                     >  7:37529‑M2/1‑24 (MQ=255)                                                                                                                             gACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGAt                                    <  2:118922/128‑1 (MQ=255)                                                                                                                             gACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGAt                                    >  1:118922/1‑128 (MQ=255)                                                                                                                             gACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCATCCGCGt               >  1:164056/1‑149 (MQ=255)                                                                                                                               ggaATCGATAGGCGAACTgtccagcagggcagggaccagcgcaggcgagtccagggtcctcatgtattgggcgcgatccagcacgttacggtatttctgttggatatcctcaagcagttcggctgtgacctgggccgtctcttcggtgg             >  5:168485‑M2/2‑18 (MQ=255)                                                                                                                               cGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCATCCGCGtt              >  4:17611/1‑148 (MQ=255)                                                                                                                                    acatacGCGAACTGTCCAGCATTACCCAGATCACTCAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCCTCGCCCCGCAACGATCACGCGCCGGGTCATCCGCGATGAcc          >  8:135582/1‑147 (MQ=255)                                                                                                                                    acatacGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGTCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCAt                     >  6:105617/1‑136 (MQ=255)                                                                                                                                    acatacGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGTCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCAt                     <  5:105617/136‑1 (MQ=255)                                                                                                                                     catacTCTAACTGTCCAGCATTACCCAGATCACGGAGCATCAACTGAGCTCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGACCCGCAACGATCAGGCGCCGGGTCATCCGCGTTGACCGAg       <  2:318193/149‑1 (MQ=255)                                                                                                                                      atacGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCATCCGCGTTGACCGAgg      >  5:349780/1‑149 (MQ=255)                                                                                                                                          gcgAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCATCCGCGTTGACCGAGGTCGa  >  2:4494/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                               CGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTTGAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCATCCGCGTTGACCGAGGTCGA  >  NC_002947/5709693‑5709978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.