| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5709819 | 42 (0.660) | 4 (0.070) | 4/238 | NT | 9.2% | coding (3837/4761 nt) | PP_5009 | hypothetical protein |
| ? | NC_002947 | = 5709836 | 40 (0.670) | coding (3854/4761 nt) | PP_5009 | hypothetical protein | |||||
CCACGACGGGCTGGCAGCCACCGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCATCCGCGTT > NC_002947/5709672‑5709966 | ccACGACGGGCTGGCAGCCACCGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGAC < 8:223725‑M1/148‑1 (MQ=255) cACGACGGGCTGGCAGCCACCGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTTCGAGGATATCCTTCAGAAATACCGTAACGAGCTGCATCGCGCCCAATACATGAGGACACTGGACTCGACTGCGCTGTTCGCTGACTTGCTGTAC > 1:318193‑M1/1‑148 (MQ=255) acgacgGGCTGGCAGCCACCGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGaa < 8:97143/149‑1 (MQ=255) ggCTGGCATCCACCGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAatacata < 7:372530/149‑1 (MQ=255) gCAGCCACCGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATAcgc < 5:411541/147‑1 (MQ=255) aGCCACCGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAAc > 1:134068/1‑149 (MQ=255) ccACCGAAGAGACGGCCCAGGTCACAGCCGAACTGCTT‑GAGGATATCCAACAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACCCTGGACTCGCCTGCGCTGGTCCCTGCCCTGCTGGACagttcgcctatcgattcc > 5:168485‑M1/1‑131 (MQ=255) cGAAGAGACGGCCAAGGTCAAAGCCGAACTGCTT‑GACGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACAgtc < 7:293656‑M2/147‑4 (MQ=255) aaGAGACGGCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTgtccag < 3:213721‑M2/148‑7 (MQ=255) agaCGGCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCAt > 1:153714/1‑148 (MQ=255) aCGTCCCAGGTCAAAGCCTAACTGCTT‑GAGTATATCATTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGATGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTa < 4:365793/148‑1 (MQ=255) ggCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAatacatac < 6:154778/128‑1 (MQ=255) ggCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTAcc > 3:36039/1‑148 (MQ=255) cccAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTgtccagc < 6:374658‑M2/140‑8 (MQ=255) cccAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTgtccagc > 5:374658‑M2/1‑133 (MQ=255) ccAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGATACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTAcc > 3:381700/1‑145 (MQ=255) cAGGTCAAAGCCGAACTGCTT‑GAGGTTATGGTTCAGAAATCCCGTAAGGTGCTGGATCGCGCCCAATACTTGAGGACACTGGACTGGCGTGCGGTGGTCGCTGACGTGCTGGACagttcgcgtatgtattcgtccagcacgtcagcgac < 6:168485‑M1/149‑36 (MQ=255) gTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCAc < 3:343323/149‑1 (MQ=255) tCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACg < 4:213721/149‑1 (MQ=255) aaaGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACgg < 4:36039/148‑1 (MQ=255) aaaGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACg > 5:425420/1‑147 (MQ=255) ccGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAatacatac > 5:421225/1‑114 (MQ=255) ccGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAatacatac < 6:421225/114‑1 (MQ=255) gAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTgtc < 1:373891‑M2/122‑4 (MQ=255) gAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTgtc > 2:373891‑M2/1‑119 (MQ=255) gAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGagcagc > 7:74830/1‑148 (MQ=255) gCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACt > 6:237256/1‑147 (MQ=255) gAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGATACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAgc < 4:381700/147‑1 (MQ=255) gAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAg < 1:229109/146‑1 (MQ=255) aGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAgcgc < 8:74830/148‑1 (MQ=255) cTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGAc < 5:177508/149‑1 (MQ=255) cTTCAGAAATACCGTAACGTGCTGCATAGCGCCCAATACATGAGCACACTGGACTCGCCTGCGCTGGACGCTGACGTGCTGGACGAATACATACGCGAACTGTCAAGCATTACCCAGATCACGGAGCAGCAACTCAGCGCGACCCTGAc > 3:202487/1‑149 (MQ=255) aCCGTCTCGTGCTGGATCTGGCCCTATACATGAGGTCACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACTTACGCTAACTGTCCAGCATTACCCAGATCACGGAGCAGAAACTGAGCGCGACCCTGACCAACCTCGa < 8:293656/148‑1 (MQ=255) cGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCAtt < 7:133768/99‑1 (MQ=255) cGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCAtt > 8:133768/1‑99 (MQ=255) gATCGCGAACAATACATGAGGACACTGGACTCGCCTGAGCTGGTCGATGAAGTGCTGGACGAATAAATACTCGAACTGTCCAGCATTAACCAGATAAAGGAGCAGCAACTGAGCGCGACCCTTACCAAc > 6:66411/1‑129 (MQ=255) aTCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACagttcgcgtatgtattcgtccagc > 7:37529‑M1/1‑59 (MQ=255) aTCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACagttcgcgtatgtattcgtccagc < 8:37529‑M1/83‑25 (MQ=255) aTACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAg < 2:134068/149‑1 (MQ=255) cATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAgcg < 5:237256/148‑1 (MQ=255) aGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCt < 2:153714/148‑1 (MQ=255) ggACACTGGACTCGCCTGCGCTGGGCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTAc < 6:425420/149‑1 (MQ=255) gACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCt > 3:170946/1‑111 (MQ=255) gACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCt < 4:170946/111‑1 (MQ=255) acTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATc > 4:132344/1‑149 (MQ=255) tCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCg > 5:400213/1‑148 (MQ=255) tCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCg > 1:76174/1‑148 (MQ=255) cgcTTGTCGCTGACGTGCTGGAAGTATACATACGCGTACTGTCCAGCATTACCCAGATCACTGAGCAGCTACTGAGCGCGACCCTGACAAACCTCGACAGCGGCATCAGTCCCCCCTCGCCATCGCCCTACGATCTCCCAGCAACGATc < 4:202487/149‑1 (MQ=255) cgcTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACAAt < 3:132344/148‑1 (MQ=255) gcTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCa < 4:88588/149‑1 (MQ=255) tGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGagcagc < 4:335338/66‑1 (MQ=255) tGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGagcagc > 3:335338/1‑66 (MQ=255) tGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAgg > 1:334468/1‑149 (MQ=255) gTCGCTGACGTGCTGGACGAATACATACGCGAACTgtccagcacgtcagcgaccaccgcacgccagtccagtgtcctcaagtattgggcgcgatccagcaccttacgggatttctgaaccataacctcaagcagttcggctttgacctg < 6:168485‑M2/149‑115 (MQ=255) gTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGgcg > 1:343303/1‑149 (MQ=255) tGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCATc < 6:400213/149‑1 (MQ=255) gCTGGACagttcgcgtatgtattcgtccagcacgtcagcgaccagcgcaggcgagtccagtgtcctcatgtattgggcgcgatccagcacgttacggtatttctgaaggatatcctcaagcagttcggctttgacctggg < 6:374658‑M1/140‑134 (MQ=255) gCTGGACagttcgcgtatgtattcgtccagcacgtcagcgaccagcgcaggcgagtccagtgtcctcatgtattgggcgcgatccagcacgttacggtatttctgaaggatatcctcaagcagttcggctttgacctggg > 5:374658‑M1/1‑7 (MQ=255) gCTGGACGAATACATACGCGAACTgtccagcacgtcagcgaccagcgcaggcgagtccagtgtcctcatgtattgggcgcgat > 7:37529‑M2/1‑24 (MQ=255) gCTGGACGAATACATACGCGAACTgtccagcacgtcagcgaccagcgcaggcgagtccagtgtcctcatgtattgggcgcgat < 8:37529‑M2/83‑60 (MQ=255) cTGGACagttcgcgtatgtattcgtccagcacgtcagcgaccagcgcaggcgagtccagtgtcctcatgtattgggcgcgatccagcacgttacggtatttctgaaggatatcctcaagcagttcggctttgacctgggccgtctctt < 3:213721‑M1/148‑143 (MQ=255) gACtgttcgcgtatgtattcgtccagcacgtcagcgaccagcgcaggcgagtccagtgtcctcatgtattgggcgcgatccagcacgttacggtatttctgaaggatatcgtcaagcagttcggctttgaccttggccgtctcttcg < 7:293656‑M1/147‑145 (MQ=255) gACagttcgcgtatgtattcgtccagcacgtcagcgaccagcgcaggcgagtccagtgtcctcatgtattgggcgcgatccagcacgttacggtatttctgaaggatatcctcaagcagttc > 2:373891‑M1/1‑3 (MQ=255) gACagttcgcgtatgtattcgtccagcacgtcagcgaccagcgcaggcgagtccagtgtcctcatgtattgggcgcgatccagcacgttacggtatttctgaaggatatcctcaagcagttc < 1:373891‑M1/122‑120 (MQ=255) gACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGAt < 2:118922/128‑1 (MQ=255) gACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGAt > 1:118922/1‑128 (MQ=255) gACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCATCCGCGt > 1:164056/1‑149 (MQ=255) cGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCATCCGCGtt > 4:17611/1‑148 (MQ=255) | CCACGACGGGCTGGCAGCCACCGAAGAGACGGCCCAGGTCAAAGCCGAACTGCTT‑GAGGATATCCTTCAGAAATACCGTAACGTGCTGGATCGCGCCCAATACATGAGGACACTGGACTCGCCTGCGCTGGTCGCTGACGTGCTGGACGAATACATACGCGAACTGTCCAGCATTACCCAGATCACGGAGCAGCAACTGAGCGCGACCCTGACCAACCTCGACAGCGGCATCAGTCCCCCCTCGCCAGCGCCCTACCATCGCCCCGCAACGATCAGGCGCCGGGTCATCCGCGTT > NC_002947/5709672‑5709966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |