New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5983781	62 (0.970)	4 (0.070)	4/240	NT	5.5%	coding (4426/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	= 5983820	79 (1.310)					coding (4465/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

AACGGCCAAGTTCTACACGCGCCTGGCCGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5983627‑5983781 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccagcGCAGGCTGGCCGCGGCATTGGAGGCGATGCCCAGGAGCGGCTGGCTGATCTCGTGGGCGATGGACGCTGACAGCTCATTCATCGCCTGCAAGTGCGCACTGCGCGCCAGTTCCGCACGCGAGCGGCGCAACTCGGCCTCCATCTGGGT  <  NC_002947/5983820‑5983673                                                                                                                                                                                                                                                                                                                 AACGGCCAAGTTCTACACGCGCCTGGCCGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCA                                                                                                                                                            <  5:163587/149‑1      CCAAGTTCTACACGCGCCTGGCCGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAG                                                                                                                                                       >  7:337362/1‑149          GTTCTACACGCGCCTGGCCGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCA                                                                                                                                                            >  7:144345/1‑140          GTTCTACACGCGCCTGGCCGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCA                                                                                                                                                            <  8:144345/140‑1                           CCGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGC                                                                                                                                                          <  5:240336/125‑1                           CCGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGC                                                                                                                                                          >  6:240336/1‑125                                      CAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCGCAGGCTGGCCGCGGCATTGGAGGCGATGCC                                                                                                                       >  6:38260/1‑149                                                 CCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCC                                                                                                                                                         >  5:90484/1‑104                                                 CCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCC                                                                                                                                                         <  6:90484/104‑1                                                        GAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCGCAGGCTGGCCGCGGCATTGGAGGCGATGCCCAGGAGCGGCTGGCTGAT                                                                                                     <  5:38260/149‑1                                                                      CCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCGCAGGCTGGCCGCGGCATTGGAGGCAATGCCCAGGAGC                                                                                                                >  1:392554/1‑124                                                                      CCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCGCAGGCTGGCCGCGGCATTGGAGGCAATGCCCAGGAGC                                                                                                                <  2:392554/124‑1                                                                                                                                                       CCAGCGCAGGCTGGCCGCGGCATTGGAGGCGATGCCCAGGAGCGGCTGGCTGATCTCGTGGGCGATGGACGCTGACAGCGCATTCATCGCCTGCAAGTGCGCACTGCGCGC                                            <  7:259754/111‑1                                                                                                                                                       CCAGCGCAGGCTGGCCGCGGCATTGGAGGCGAAGCCCAGGAGCGGCTGGCTGATCTCGTGGGCGATGGACGCTGACAGCTCATTCATCGCCTGCAAGTGCGCACTGCGCGCCAGTTCCGCACGCGAGCGGCGCAACTCGGCCTCCATCT      <  6:309835/149‑1                                                                                                                                                         AGCGCAGGCTGGCCGCGGCATTGGAGGCGATGCCCAGGAGCGGCTGGCTGATCTCGTGGGCGATGGACGCTGACAGCTCATTCATCGCCTGCAAGTGCGCACTGCGCGCCAGTTCCGCACGCGAGCGGCGCAACTCGGCCTCCATCTGG    <  3:380322/149‑1                                                                                                                                                           CGCAGGCTGGCCGCGGCATTGGAGGCGATGCCCAGGAGCGGCTGGCTGATCTCGTGGGCGATGGACGCTGACAGCTCATTCATCGCCTGCAAGTGCGCACTGCGCGCCAGTTCCGCACGCGAGCGGCGCAACTCGGCCTCCATCTGGGT  <  3:259390/149‑1                                                                                                                                                                                                                                                                                                                 AACGGCCAAGTTCTACACGCGCCTGGCCGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5983627‑5983781 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccagcGCAGGCTGGCCGCGGCATTGGAGGCGATGCCCAGGAGCGGCTGGCTGATCTCGTGGGCGATGGACGCTGACAGCTCATTCATCGCCTGCAAGTGCGCACTGCGCGCCAGTTCCGCACGCGAGCGGCGCAACTCGGCCTCCATCTGGGT  <  NC_002947/5983820‑5983673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.