New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5983781	62 (0.970)	4 (0.070)	4/240	NT	5.5%	coding (4426/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	= 5983820	79 (1.310)					coding (4465/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

TTCTACACGCGCCTGGCCGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCT  >  NC_002947/5983637‑5983929                                                                                                                                                 |                                                                                                                                                     ttCTACACGCGCCTGGCCGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCTGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCCGCCGCt                                                                                                                                                  >  6:290160/1‑149 (MQ=255)       acGCGCCTGGCCGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGACGCTCCTggg                                                                                                                                            >  5:188030/1‑149 (MQ=255)                  cGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTcc                                                                                                                                  >  2:113302/1‑148 (MQ=255)                  cGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTcc                                                                                                                                  >  5:15741/1‑148 (MQ=255)                  cGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTcc                                                                                                                                  >  3:18891/1‑148 (MQ=255)                   gAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCaa                                                                                                                                <  6:304816/149‑1 (MQ=255)                       aaaaCCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGcc                                                                                                                            >  2:8695/1‑149 (MQ=255)                        aaaCCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCcg                                                                                                                           >  1:86641/1‑149 (MQ=255)                           ccAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCgg                                                                                                                        <  4:80630/149‑1 (MQ=255)                            cAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCgcaggctggccgcggcattggaggcgatgcc                                                                                                                       >  6:38260‑M1/1‑118 (MQ=255)                            cAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGc                                                                                                                       >  5:270584/1‑149 (MQ=255)                            cAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGc                                                                                                                       >  5:174266/1‑149 (MQ=255)                                     aCCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCg                                                                                                              <  3:259390‑M2/149‑2 (MQ=255)                                       ccAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCgct                                                                                                            <  3:380322‑M2/149‑4 (MQ=255)                                         aGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCTTCGCCTCCAATGCCGCGGCCAGCCTGCgctgg                                                                                                          <  6:309835‑M2/149‑6 (MQ=255)                                              gAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCgcaggctggccgcggcattggaggcgatgcccaggagcggctggctgat                                                                                                     <  5:38260‑M1/149‑50 (MQ=255)                                              gAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCa                                                                                                      >  4:403593/1‑148 (MQ=255)                                                 gCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAAcg                                                                                                  >  7:70638/1‑149 (MQ=255)                                                   cGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAAcgcg                                                                                                >  7:198030/1‑149 (MQ=255)                                                    gAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACgcgc                                                                                               >  5:239310/1‑149 (MQ=255)                                                    gAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCACCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACgcgc                                                                                               <  1:113302/149‑1 (MQ=255)                                                     aGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTcc                                                                                                                                  >  7:292634/1‑113 (MQ=255)                                                     aGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTcc                                                                                                                                  <  8:292634/113‑1 (MQ=255)                                                           gccgcTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAAccc                                                                                        <  7:256124/149‑1 (MQ=255)                                                            ccgcTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCgcaggctggccgcggcattggaggcaatgcccaggagc                                                                                                                >  1:392554‑M1/1‑86 (MQ=255)                                                            ccgcTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCgcaggctggccgcggcattggaggcaatgcccaggagc                                                                                                                <  2:392554‑M1/124‑39 (MQ=255)                                                               cTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGAcc                                                                                    <  2:86641/149‑1 (MQ=255)                                                                  gcgTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTgg                                                                                 <  6:270584/149‑1 (MQ=255)                                                                    gTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGgaa                                                                               <  5:290160/149‑1 (MQ=255)                                                                       cGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGgaagaa                                                                            <  4:380322/149‑1 (MQ=255)                                                                        ggAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGaagaag                                                                           >  7:173905/1‑149 (MQ=255)                                                                        ggAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGaagaag                                                                           <  6:340935/149‑1 (MQ=255)                                                                         gAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGc                                                                          <  7:93533/149‑1 (MQ=255)                                                                             tGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGAtt                                                                      >  1:408016/1‑149 (MQ=255)                                                                             tGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGAt                                                                       >  1:412141/1‑148 (MQ=255)                                                                               gcgcgcAGTGCGCACTTGCAGGCGATGAATGCGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCgctgg                                                                                                          <  7:259754‑M2/111‑6 (MQ=255)                                                                               gcgcgcAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTg                                                                     <  8:173905/148‑1 (MQ=255)                                                                               gcgcgcAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGc                                                                    >  8:272036/1‑149 (MQ=255)                                                                                cgcgcAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGcc                                                                   <  1:8695/149‑1 (MQ=255)                                                                                 gcgcAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCg                                                                  >  1:254089/1‑149 (MQ=255)                                                                                 gcgcAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCg                                                                  >  7:17601/1‑149 (MQ=255)                                                                                   gcAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGc                                                                <  6:15741/149‑1 (MQ=255)                                                                                    cAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGcc                                                               >  5:57392/1‑149 (MQ=255)                                                                                         cgcACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGaa                                                          <  6:174266/149‑1 (MQ=255)                                                                                            aCTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAAcgcg                                                                                                <  1:165192/108‑1 (MQ=255)                                                                                            aCTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAAcgcg                                                                                                >  2:165192/1‑108 (MQ=255)                                                                                                 cAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATcc                                                   <  6:188030/148‑1 (MQ=255)                                                                                                       atgaatgaGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGa                                            <  6:180725/149‑1 (MQ=255)                                                                                                          aatgaGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACa                                          <  8:337362/148‑1 (MQ=255)                                                                                                          aatgaGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACa                                          <  8:198030/148‑1 (MQ=255)                                                                                                           atgaGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTACCGGCCTGGAAGACATCCGCAACGACAg                                         <  2:412141/148‑1 (MQ=255)                                                                                                                  gTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTgg                                                            <  5:106445/122‑1 (MQ=255)                                                                                                                  gTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTgg                                                            >  6:106445/1‑122 (MQ=255)                                                                                                                  gTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGaa                                                          <  3:252199/124‑1 (MQ=255)                                                                                                                  gTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGaa                                                          >  4:252199/1‑124 (MQ=255)                                                                                                                     aGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGAc                                           <  8:156960/136‑1 (MQ=255)                                                                                                                     aGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGAc                                           >  7:156960/1‑136 (MQ=255)                                                                                                                          ccATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGc                                <  3:99742/142‑1 (MQ=255)                                                                                                                          ccATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGc                                >  4:99742/1‑142 (MQ=255)                                                                                                                           cATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGaa                                                          >  5:97858/1‑115 (MQ=255)                                                                                                                           cATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGaa                                                          <  6:97858/115‑1 (MQ=255)                                                                                                                                 ccACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACa                        >  6:340485/1‑143 (MQ=255)                                                                                                                                 ccACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACa                        <  5:340485/143‑1 (MQ=255)                                                                                                                                  cACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCg                 <  7:272036/149‑1 (MQ=255)                                                                                                                                   aCGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCgg                >  5:181202/1‑149 (MQ=255)                                                                                                                                       gaTCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAAc                                    >  7:329884/1‑125 (MQ=255)                                                                                                                                       gaTCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAAc                                    <  8:329884/125‑1 (MQ=255)                                                                                                                                       gaTCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGgcgc            >  3:74388/1‑149 (MQ=255)                                                                                                                                        aTCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCgctggctgatctcgtgggcgatggacgctgacagctcattcatcgcctgcaagtgcgcactgcgcgccagttccgcacgcgagcggcgcaactcggcctc           <  5:38260‑M2/149‑101 (MQ=255)                                                                                                                                           agccagccGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCg        >  3:208141/1‑149 (MQ=255)                                                                                                                                            gccagccGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCaa                          >  3:316536/1‑130 (MQ=255)                                                                                                                                            gccagccGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCaa                          <  4:316536/130‑1 (MQ=255)                                                                                                                                             ccagcgcaggctggccgcggcattggaggcgatgcccaggagcggctggctgatctcgtgggcgatggacgctgacagcgcattcatcgcctgcaagtgcgcactgcgcgc                                            <  7:259754‑M1/111‑107 (MQ=255)                                                                                                                                             ccagcgcaggctggccgcggcattggaggcgaagcccaggagcggctggctgatctcgtgggcgatggacgctgacagctcattcatcgcctgcaagtgcgcactgcgcgccagttccgcacgcgagcggcgcaactcggcctccatct      <  6:309835‑M1/149‑145 (MQ=255)                                                                                                                                             ccagccGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAAcgcg                                                                                                <  3:310087/59‑1 (MQ=255)                                                                                                                                             ccagccGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAAcgcg                                                                                                >  4:310087/1‑59 (MQ=255)                                                                                                                                               agcgcaggctggccgcggcattggaggcgatgcccaggagcggctggctgatctcgtgggcgatggacgctgacagctcattcatcgcctgcaagtgcgcactgcgcgccagttccgcacgcgagcggcgcaactcggcctccatctgg    <  3:380322‑M1/149‑147 (MQ=255)                                                                                                                                                 cgcaggctggccgcggcattggaggcgatgcccaggagcggctggctgatctcgtgggcgatggacgctgacagctcattcatcgcctgcaagtgcgcactgcgcgccagttccgcacgcgagcggcgcaactcggcctccatctgggt  <  3:259390‑M1/149‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TTCTACACGCGCCTGGCCGAGGAAAACCAGATCCGCACCCAGATGGAGGCCGAGTTGCGCCGCTCGCGTGCGGAACTGGCGCGCAGTGCGCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCT  >  NC_002947/5983637‑5983929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.